Snord86 (small nucleolar RNA, C/D box 86) - Rat Genome Database

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Gene: Snord86 (small nucleolar RNA, C/D box 86) Rattus norvegicus
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Symbol: Snord86
Name: small nucleolar RNA, C/D box 86
RGD ID: 41029490
Description: Orthologous to human SNORD86 (small nucleolar RNA, C/D box 86); INTERACTS WITH versicolorin A (ortholog).
Type: snorna
RefSeq Status: MODEL
Previously known as: Gm23187; LOC120102091; predicted gene, 23187; small nucleolar RNA SNORD86
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83137,932,824 - 137,932,909 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3137,932,824 - 137,932,909 (+)EnsemblGRCr8
mRatBN7.23117,479,698 - 117,479,783 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3117,479,698 - 117,479,783 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl3122,806,417 - 122,806,502 (+)NCBIrn6Rnor6.0
Cytogenetic Map3q36NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snord86
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83137,932,824 - 137,932,909 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3137,932,824 - 137,932,909 (+)EnsemblGRCr8
mRatBN7.23117,479,698 - 117,479,783 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3117,479,698 - 117,479,783 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl3122,806,417 - 122,806,502 (+)NCBIrn6Rnor6.0
Cytogenetic Map3q36NCBI
SNORD86
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38202,656,097 - 2,656,182 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl202,656,097 - 2,656,182 (+)Ensemblhg38GRCh38
GRCh37202,636,743 - 2,636,828 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera202,701,206 - 2,701,291 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef202,585,971 - 2,586,056 (+)NCBIHuRef
CHM1_1202,637,150 - 2,637,235 (+)NCBICHM1_1
T2T-CHM13v2.0202,686,564 - 2,686,649 (+)NCBIT2T-CHM13v2.0
Gm25432
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,485,957 - 5,486,828 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,486,026 - 5,486,753 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38195,435,929 - 5,436,800 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,435,998 - 5,436,725 (+)Ensemblmm10GRCm38
MGSCv37195,435,926 - 5,436,847 (+)MERGEMGSCv37MGSCv37mm9NCBIm37
Celera195,308,160 - 5,309,031 (+)NCBICelera
Cytogenetic Map19ANCBI
LOC119865811
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2418,392,902 - 18,392,987 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02419,021,376 - 19,021,461 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2419,021,376 - 19,021,461 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12418,577,611 - 18,577,696 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02418,687,863 - 18,687,948 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02419,016,962 - 19,017,047 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)384091273129091273Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)373376539118376539Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3115638168135181505Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat


Expression

RNA-SEQ Expression

ectoderm
mesenchyme
nervous system
renal system
sensory system
visual system
9 1 9 1 9 9

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005503113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000086450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3137,932,824 - 137,932,909 (+)Ensembl
mRatBN7.2 Ensembl3117,479,698 - 117,479,783 (+)Ensembl
RefSeq Acc Id: XR_005503113
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83137,932,824 - 137,932,909 (+)NCBI
mRatBN7.23117,479,698 - 117,479,783 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41029490 AgrOrtholog
BioCyc Gene G2FUF-47868 BioCyc
Ensembl Genes ENSRNOG00000051605 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000086450 ENTREZGENE
NCBI Gene LOC120102091 ENTREZGENE
PhenoGen Snord86 PhenoGen
RatGTEx ENSRNOG00000051605 RatGTEx
RNAcentral URS00006CCDA9 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Snord86  small nucleolar RNA, C/D box 86  Gm23187  predicted gene, 23187  Data merged from RGD:15006530 737654 PROVISIONAL
2022-04-01 Snord86  small nucleolar RNA, C/D box 86  LOC120102091  small nucleolar RNA SNORD86  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2021-01-27 LOC120102091  small nucleolar RNA SNORD86      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Gm23187  predicted gene, 23187      Symbol and Name status set to provisional 45752 PROVISIONAL