LOC120097305 (U6 spliceosomal RNA) - Rat Genome Database

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Gene: LOC120097305 (U6 spliceosomal RNA) Rattus norvegicus
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Symbol: LOC120097305
Name: U6 spliceosomal RNA
RGD ID: 41010480
Description: Orthologous to human RNU6-1201P (RNA, U6 small nuclear 1201, pseudogene).
Type: snrna
RefSeq Status: MODEL
Previously known as: U6
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81597,597,623 - 97,597,729 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1597,597,623 - 97,597,729 (+)EnsemblGRCr8
mRatBN7.21591,190,390 - 91,190,496 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1591,190,390 - 91,190,496 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl1599,199,409 - 99,199,515 (+)NCBIrn6Rnor6.0
Cytogenetic Map15q23NCBI
JBrowse:




References

Genomics

Comparative Map Data
LOC120097305
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81597,597,623 - 97,597,729 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1597,597,623 - 97,597,729 (+)EnsemblGRCr8
mRatBN7.21591,190,390 - 91,190,496 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1591,190,390 - 91,190,496 (+)EnsemblmRatBN7.2
Rnor_6.0 Ensembl1599,199,409 - 99,199,515 (+)NCBIrn6Rnor6.0
Cytogenetic Map15q23NCBI
RNU6-1201P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381748,088,679 - 48,088,784 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1748,088,678 - 48,088,784 (-)Ensemblhg38GRCh38
GRCh371746,166,041 - 46,166,146 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map17q21.32NCBI
CHM1_11746,231,023 - 46,231,128 (-)NCBICHM1_1
T2T-CHM13v2.01748,950,491 - 48,950,596 (-)NCBIT2T-CHM13v2.0
Gm24121
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39587,076,762 - 87,076,867 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl587,076,762 - 87,076,867 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38586,928,903 - 86,929,008 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl586,928,903 - 86,929,008 (-)Ensemblmm10GRCm38
Cytogenetic Map5E1NCBI
LOC119867679
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1419,868,670 - 19,868,776 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01420,131,935 - 20,132,041 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1420,131,935 - 20,132,041 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11420,276,730 - 20,276,836 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01420,012,090 - 20,012,196 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01420,269,216 - 20,269,322 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731177Uae26Urinary albumin excretion QTL 262.40.025urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1567588667101769107Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1575788062101769107Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1568327165100062518Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)158226252098288169Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)157369065795018120Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1576306099101769107Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)158226252098288169Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1558156477101769107Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
1581519Cm59Cardiac mass QTL 592.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)158885347095840528Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157369051895018228Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)157369051899794247Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1575788062101769107Rat


Expression

RNA-SEQ Expression

mesenchyme
renal system
1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005494515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000081783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1597,597,623 - 97,597,729 (+)Ensembl
mRatBN7.2 Ensembl1591,190,390 - 91,190,496 (+)Ensembl
RefSeq Acc Id: XR_005494515
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81597,597,623 - 97,597,729 (+)NCBI
mRatBN7.21591,190,390 - 91,190,496 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41010480 AgrOrtholog
BioCyc Gene G2FUF-12507 BioCyc
Ensembl Genes ENSRNOG00000059530 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000081783 ENTREZGENE
NCBI Gene LOC120097305 ENTREZGENE
PhenoGen LOC120097305 PhenoGen
RatGTEx ENSRNOG00000059530 RatGTEx
RNAcentral URS00006F72D7 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120097305  U6 spliceosomal RNA  U6  U6 spliceosomal RNA  Data merged from RGD:15012627 737654 PROVISIONAL
2021-01-26 LOC120097305  U6 spliceosomal RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U6  U6 spliceosomal RNA      Symbol and Name status set to provisional 45752 PROVISIONAL