Snord69 (small nucleolar RNA, C/D box 69) - Rat Genome Database

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Pathways
Gene: Snord69 (small nucleolar RNA, C/D box 69) Rattus norvegicus
Analyze
Symbol: Snord69
Name: small nucleolar RNA, C/D box 69
RGD ID: 40956320
Description: INTERACTS WITH 2-hydroxypropanoic acid (ortholog); rac-lactic acid (ortholog); trovafloxacin (ortholog)
Type: snorna
RefSeq Status: MODEL
Previously known as: LOC120097628; small nucleolar RNA SNORD69
RGD Orthologs
Human
Mouse
Dog
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2166,208,922 - 6,209,001 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,208,922 - 6,209,001 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl167,099,100 - 7,099,179 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Snord69
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2166,208,922 - 6,209,001 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl166,208,922 - 6,209,001 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl167,099,100 - 7,099,179 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map16p16NCBI
SNORD69
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38352,692,736 - 52,692,812 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl352,692,736 - 52,692,812 (+)EnsemblGRCh38hg38GRCh38
GRCh37352,726,752 - 52,726,828 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36352,701,792 - 52,701,868 (+)NCBINCBI36Build 36hg18NCBI36
Celera352,705,463 - 52,705,539 (+)NCBICelera
Cytogenetic Map3p21.1NCBI
HuRef352,788,606 - 52,788,682 (+)NCBIHuRef
CHM1_1352,678,828 - 52,678,904 (+)NCBICHM1_1
T2T-CHM13v2.0352,725,647 - 52,725,723 (+)NCBIT2T-CHM13v2.0
Snord69
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391430,736,250 - 30,736,308 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1430,736,244 - 30,736,323 (-)EnsemblGRCm39 Ensembl
GRCm381431,014,293 - 31,014,351 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1431,014,287 - 31,014,366 (-)EnsemblGRCm38mm10GRCm38
MGSCv371431,827,479 - 31,827,537 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1427,272,110 - 27,272,168 (-)NCBICelera
Cytogenetic Map14BNCBI
cM Map1419.09NCBI
LOC119864796
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2037,086,967 - 37,087,043 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02037,455,736 - 37,455,812 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12036,819,281 - 36,819,357 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02037,227,902 - 37,227,978 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02037,505,388 - 37,505,464 (-)NCBIUU_Cfam_GSD_1.0


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005495183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000077419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl166,208,922 - 6,209,001 (-)Ensembl
RefSeq Acc Id: XR_005495183
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2166,208,922 - 6,209,001 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12168 BioCyc
Ensembl Genes ENSRNOG00000055658 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000077419 ENTREZGENE
NCBI Gene LOC120097628 ENTREZGENE
PhenoGen Snord69 PhenoGen
RatGTEx ENSRNOG00000055658 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-08 Snord69  small nucleolar RNA, C/D box 69  LOC120097628  small nucleolar RNA SNORD69  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-06-02 LOC120097628  small nucleolar RNA SNORD69  Snord69  small nucleolar RNA, C/D box 69  Data merged from RGD:15009622 737654 PROVISIONAL
2021-01-26 LOC120097628  small nucleolar RNA SNORD69      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 Snord69  small nucleolar RNA, C/D box 69      Symbol and Name status set to provisional 45752 PROVISIONAL