TRMT2B (tRNA methyltransferase 2 homolog B) - Rat Genome Database

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Gene: TRMT2B (tRNA methyltransferase 2 homolog B) Canis lupus familiaris
Analyze
Symbol: TRMT2B
Name: tRNA methyltransferase 2 homolog B
RGD ID: 40923596
Description: ENCODES a protein that exhibits rRNA (uridine-C5-)-methyltransferase activity (ortholog); tRNA (uracil(54)-C5)-methyltransferase activity, S-adenosyl methionine-dependent (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); developmental and epileptic encephalopathy 9 (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TRM2 tRNA methyltransferase 2 homolog B; tRNA (uracil(54)-C(5))-methyltransferase homolog; tRNA (uracil-5-)-methyltransferase homolog
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X74,921,406 - 75,001,373 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X76,361,015 - 76,406,690 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X73,929,590 - 73,974,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X75,589,853 - 75,634,947 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X75,352,421 - 75,397,722 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
TRMT2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X74,921,406 - 75,001,373 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ROS_Cfam_1.0X76,361,015 - 76,406,690 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X73,929,590 - 73,974,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X75,589,853 - 75,634,947 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X75,352,421 - 75,397,722 (-)NCBIUU_Cfam_GSD_1.0
TRMT2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X100,973,366 - 101,052,111 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX101,009,346 - 101,052,116 (-)EnsemblGRCh38hg38GRCh38
GRCh37X100,264,339 - 100,307,100 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X100,151,187 - 100,193,726 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X100,070,692 - 100,113,215NCBI
CeleraX100,783,109 - 100,825,878 (-)NCBICelera
Cytogenetic MapXq22.1NCBI
HuRefX90,068,401 - 90,112,076 (-)NCBIHuRef
CHM1_1X100,157,442 - 100,200,214 (-)NCBICHM1_1
T2T-CHM13v2.0X99,416,819 - 99,495,549 (-)NCBIT2T-CHM13v2.0
Trmt2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X133,123,704 - 133,177,770 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX133,123,088 - 133,177,733 (-)EnsemblGRCm39 Ensembl
GRCm38X134,222,955 - 134,277,023 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX134,222,339 - 134,276,984 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X130,757,494 - 130,811,523 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X129,569,305 - 129,623,290 (-)NCBIMGSCv36mm8
CeleraX117,099,787 - 117,155,672 (-)NCBICelera
Cytogenetic MapXE3NCBI
cM MapX55.95NCBI
Trmt2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X101,716,656 - 101,777,105 (-)NCBIGRCr8
mRatBN7.2X97,425,712 - 97,483,821 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X105,056,890 - 105,114,876 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X104,954,402 - 104,996,021 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X121,694,841 - 121,745,024 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX98,467,198 - 98,525,152 (-)NCBICelera
Cytogenetic MapXq32NCBI
TRMT2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X100,607,508 - 100,650,697 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X100,611,112 - 100,654,304 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X90,210,740 - 90,253,863 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X100,347,795 - 100,389,981 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX100,347,795 - 100,389,981 (-)Ensemblpanpan1.1panPan2
Trmt2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X63,344,143 - 63,381,368 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493681394,441 - 129,010 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493681393,738 - 130,928 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRMT2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX82,690,392 - 82,735,521 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X82,638,456 - 82,741,659 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X90,777,612 - 90,810,528 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRMT2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X89,259,251 - 89,391,444 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX89,354,510 - 89,382,861 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606514,273,687 - 14,312,223 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in TRMT2B
749 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_038449191   ⟹   XP_038305119
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X76,361,015 - 76,406,690 (-)NCBI
RefSeq Acc Id: XM_038524852   ⟹   XP_038380780
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X73,929,590 - 73,974,787 (-)NCBI
RefSeq Acc Id: XM_038588815   ⟹   XP_038444743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X75,352,421 - 75,397,722 (-)NCBI
RefSeq Acc Id: XM_038651147   ⟹   XP_038507075
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X75,589,853 - 75,634,947 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038305119 (Get FASTA)   NCBI Sequence Viewer  
  XP_038380780 (Get FASTA)   NCBI Sequence Viewer  
  XP_038444743 (Get FASTA)   NCBI Sequence Viewer  
  XP_038507075 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038380780   ⟸   XM_038524852
RefSeq Acc Id: XP_038507075   ⟸   XM_038651147
RefSeq Acc Id: XP_038305119   ⟸   XM_038449191
RefSeq Acc Id: XP_038444743   ⟸   XM_038588815


Additional Information

Database Acc Id Source(s)
NCBI Gene TRMT2B ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-14 TRMT2B  tRNA methyltransferase 2 homolog B  TRMT2B  tRNA methyltransferase 2 homolog B  Data merged from RGD:12318803 737654 PROVISIONAL