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Gene: LOC105375554 (uncharacterized LOC105375554) Homo sapiens

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Symbol:

LOC105375554

Name:

uncharacterized LOC105375554

RGD ID:

38621372

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	148,381,638 - 148,436,767 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
Cytogenetic Map	7	q36.1	NCBI
CHM1_1	7	148,083,318 - 148,142,387 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	149,561,250 - 149,618,788 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC105375554
344 total Variants

QTLs in Region (GRCh38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
406886833	GWAS535809_H	glycerol-3-phosphate measurement QTL GWAS535809 (human)		0.000005	glycerol-3-phosphate measurement		7	148420354	148420355	Human
1559221	SCL67_H	Serum cholesterol level QTL 67 (human)	2.98	0.002	Lipid level	triglyceride	7	141776251	159345973	Human
1559237	SCL70_H	Serum cholesterol level QTL 70 (human)	3.52	0.002	Lipid level	triglyceride	7	141776251	159345973	Human
1578618	SCL127_H	Serum cholesterol level QTL 127 (human)	3.7		Lipid level	triglyceride	7	141776251	159345973	Human
1559218	SCL69_H	Serum cholesterol level QTL 69 (human)	3.41	0.002	Lipid level	triglyceride	7	141776251	159345973	Human
1559232	SCL66_H	Serum cholesterol level QTL 66 (human)	2.98	0.002	Lipid level	triglyceride	7	141776251	159345973	Human
1559264	SCL68_H	Serum cholesterol level QTL 68 (human)	3.1	0.002	Lipid level	triglyceride	7	141776251	159345973	Human
1559263	SCL72_H	Serum cholesterol level QTL 72 (human)	3.25		Lipid level	triglyceride	7	141776251	159345973	Human
597310994	GWAS1407068_H	Stuttering QTL GWAS1407068 (human)		0.000002	Stuttering		7	148391081	148391082	Human
597056110	GWAS1152184_H	adolescent idiopathic scoliosis QTL GWAS1152184 (human)		0.0000005	adolescent idiopathic scoliosis		7	148415142	148415143	Human
1559213	SCL71_H	Serum cholesterol level QTL 71 (human)	3.46		Lipid level	triglyceride	7	141776251	159345973	Human
1578610	SCL128_H	Serum cholesterol level QTL 128 (human)	2.2		Lipid level	LDL cholesterol	7	141776251	159345973	Human

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_001744998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007060576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007077983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_007077984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_928093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_928094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC083849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_007060576

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	148,386,536 - 148,396,113 (-)	NCBI

RefSeq Acc Id:

XR_007077983

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	7	149,561,250 - 149,576,062 (-)	NCBI

RefSeq Acc Id:

XR_007077984

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	7	149,561,250 - 149,618,788 (-)	NCBI

RefSeq Acc Id:

XR_928093

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	148,381,638 - 148,396,113 (-)	NCBI

Sequence:

show sequence

TGGCAACATGTACAACCGCGTTGCCCCGCACTTAGCCAGCCCCACGTGACACAGGCTGACAGCT
GCAATGATTTCCATGCACAGACCCCAGGAAAATGCACCTTTGAGTGCCATGCCAGGTGATTCTA
AGCACATTAAAATCTGGATGACACTTATCTGAATCATTTCGCAACTTGGAGAGAGATGGAGAAG
ACACGCATGGTGTAACTGGGCATCACCAGAATGTGCACTGCCATCTGTGGCTGTCTTCCTGCTG
GCAAATCCTTTTCATTCCAAGCAAATAAGATTCCCTAAATTAGACAAAAAGGAAGAAACACAAC
AGAGTCCATAATTCTGAGAGGAAGAGAAGAGTGATCATCAGCAGCAAAAGGCAATTGCAGAGAA
GCACCACCAAGAGCCAGCTTCATGCTCAGGAGTGAATGCTGAGCCGCCTCCTCGTGGTTTCCGG
TGCTCCACATGTTCAGAGAAACTTCTCTGCTCAAATGTTGCCTTTTCCAAAACCACCCATGG

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RefSeq Acc Id:

XR_928094

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	148,386,536 - 148,436,767 (-)	NCBI

Sequence:

show sequence

CATCCCAGCTCCTGCACCTGTCTGTCTGCATGTTTCCCCCTCTTGTAAGGGGTTTGAGTACATG
GTGGCCAAGCAAACAGGCCACACCCTTGTTGCAAGTCCCGCGAGAGGTTCAGAGAACTCTCCCG
TTTCACTCCTGCCTCAGGCCTCAGCCACCACAGTAAGTGGAACTCTATACCTCCACCTCGCCTG
GCTGGGTGGAGCCTCTAAACTCAGGATTCTGCCTTGAGCTGTGGCTCTCCCCTCAGGTTGACAG
GGTCCAGAGCAAAACCTACGGAAGAAGCTGCAGAGGCCAGGTGGAGGGAAGGATGCTGAACTGG
AGGAGGCCAGGAAATTATGAGGTGATTCTAAGCACATTAAAATCTGGATGACACTTATCTGAAT
CATTTCGCAACTTGGAGAGAGATGGAGAAGACACGCATGGTGTAACTGGGCATCACCAGAATGT
GCACTGCCATCTGTGGCTGTCTTCCTGCTGGCAAATCCTTTTCATTCCAAGCAAATAAGATTCC
CTAAATTAGACAAAAAGGAAGAAACACAACAGAGTCCATAATTCTGAGAGGAAGAGAAGAGTGA
TCATCAGCAGCAAAAGGCAATTGCAGAGAAGCACCACCAAGAGCCAGCTTCATGCTCAGGAGTG
AATGCTGAGCCGCCTCCTCGTGGTTTCCGGTGCTCCACATGTTCAGAGAAACTTCTCTGCTCAA
ATGTTGCCTTTTCCAAAACCACCCATGG

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Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	LOC105375554	COSMIC
GTEx	LOC105375554	GTEx
Human Proteome Map	LOC105375554	Human Proteome Map
NCBI Gene	LOC105375554	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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