H2ac1 (H2A clustered histone 1) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: H2ac1 (H2A clustered histone 1) Rattus norvegicus
Analyze
Symbol: H2ac1
Name: H2A clustered histone 1
RGD ID: 3854
Description: Predicted to enable DNA binding activity. Predicted to act upstream of or within chromatin organization. Predicted to be located in female germ cell nucleus. Predicted to be part of nucleosome. Orthologous to human H2AC1 (H2A clustered histone 1); PARTICIPATES IN systemic lupus erythematosus pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Hist1h2aa; histone cluster 1 H2A family member a; histone cluster 1, H2aa; histone H2A type 4; histone H2A, testis; Testis-specific histone 2a; Th2a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21741,171,384 - 41,171,776 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,135,489 - 41,172,022 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1741,238,750 - 41,239,142 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01742,842,796 - 42,843,188 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01741,127,112 - 41,127,504 (-)NCBIRnor_WKY
Rnor_6.01743,422,454 - 43,422,846 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,422,454 - 43,422,846 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01745,279,292 - 45,279,684 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41748,289,528 - 48,289,920 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11748,292,368 - 48,292,761 (-)NCBI
Celera1740,803,000 - 40,803,392 (-)NCBICelera
Cytogenetic Map17p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Presence of a bi-directional S phase-specific transcription regulatory element in the promoter shared by testis-specific TH2A and TH2B histone genes. Huh NE, etal., Nucleic Acids Res 1991 Jan 11;19(1):93-8.
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9040779   PMID:19135898   PMID:21630459   PMID:23533145   PMID:24506885   PMID:27693081   PMID:28263745  


Genomics

Comparative Map Data
H2ac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21741,171,384 - 41,171,776 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1741,135,489 - 41,172,022 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1741,238,750 - 41,239,142 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01742,842,796 - 42,843,188 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01741,127,112 - 41,127,504 (-)NCBIRnor_WKY
Rnor_6.01743,422,454 - 43,422,846 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1743,422,454 - 43,422,846 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01745,279,292 - 45,279,684 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41748,289,528 - 48,289,920 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11748,292,368 - 48,292,761 (-)NCBI
Celera1740,803,000 - 40,803,392 (-)NCBICelera
Cytogenetic Map17p11NCBI
H2AC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38625,726,063 - 25,726,562 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl625,723,397 - 25,726,562 (-)EnsemblGRCh38hg38GRCh38
GRCh37625,726,291 - 25,726,790 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36625,834,270 - 25,834,769 (-)NCBINCBI36Build 36hg18NCBI36
Build 34625,834,269 - 25,834,769NCBI
Celera626,953,503 - 26,954,002 (-)NCBICelera
Cytogenetic Map6p22.2NCBI
HuRef625,669,273 - 25,669,772 (-)NCBIHuRef
CHM1_1625,728,498 - 25,728,997 (-)NCBICHM1_1
T2T-CHM13v2.0625,591,841 - 25,592,340 (-)NCBIT2T-CHM13v2.0
H2ac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391324,118,420 - 24,118,896 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1324,118,445 - 24,118,834 (+)EnsemblGRCm39 Ensembl
GRCm381323,934,437 - 23,934,913 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1323,934,462 - 23,934,851 (+)EnsemblGRCm38mm10GRCm38
MGSCv371324,026,331 - 24,026,720 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361323,941,927 - 23,942,316 (+)NCBIMGSCv36mm8
Celera1324,166,147 - 24,166,536 (+)NCBICelera
Cytogenetic Map13A3.1NCBI
LOC102003136
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554831,358,588 - 1,358,983 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554831,358,562 - 1,359,048 (+)NCBIChiLan1.0ChiLan1.0
LOC100978953
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1625,886,573 - 25,887,064 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl625,886,620 - 25,887,015 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0625,560,820 - 25,561,293 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
H2AC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13523,677,141 - 23,677,728 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3523,677,318 - 23,677,713 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3523,579,697 - 23,580,587 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03523,792,817 - 23,793,322 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3523,792,927 - 23,793,322 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13523,602,572 - 23,603,120 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03523,653,118 - 23,653,676 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03525,090,858 - 25,091,422 (-)NCBIUU_Cfam_GSD_1.0
LOC101970492
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049461,905,084 - 1,905,534 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366711,716,053 - 1,716,478 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H2AC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl720,464,408 - 20,464,803 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1720,463,528 - 20,464,825 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2721,764,337 - 21,764,820 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103222032
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11746,527,327 - 46,527,794 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1746,527,356 - 46,527,748 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604425,660,206 - 25,661,014 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in H2ac1
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:21
Count of miRNA genes:20
Interacting mature miRNAs:21
Transcripts:ENSRNOT00000050526
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)173136839173951021Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172702794960463643Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)171864018263640182Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)172840914773409147Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)172840914773409147Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318457246843Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)173455084373951021Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172459934069599340Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172129303960781592Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1354640Scl32Serum cholesterol level QTL 325.4blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)171578159260781592Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1354659Scl68Serum cholesterol level QTL 683.9blood VLDL cholesterol amount (VT:0005144)blood very low density lipoprotein cholesterol level (CMO:0000648)171578159260781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173199078481292925Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172365318468653184Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172702794956836890Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174054004180387013Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172308056759555013Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172245492450909196Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173583708569599340Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)172738994653481766Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173199078476990784Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172365318468653184Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)173747984782479847Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172365318468653184Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172365318470974005Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171533061355836425Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173136839162109574Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172365318468653184Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173199078450909196Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172365318468653184Rat

Markers in Region
Hist1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01745,279,230 - 45,279,366NCBIRnor5.0
RGSC_v3.41748,289,467 - 48,289,602UniSTSRGSC3.4
Celera1740,802,939 - 40,803,074UniSTS
Cytogenetic Map17p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 14 1 1 6 1 1
Low 2 9 22 14 2 14 7 7 10 8 15 7 7
Below cutoff 1 14 24 24 1 24 1 25 9 16 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000050526   ⟹   ENSRNOP00000039289
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1743,422,454 - 43,422,846 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102312   ⟹   ENSRNOP00000096965
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1741,167,253 - 41,172,022 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105541   ⟹   ENSRNOP00000094005
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1741,135,489 - 41,172,022 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113852   ⟹   ENSRNOP00000088231
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1741,153,089 - 41,172,022 (-)Ensembl
RefSeq Acc Id: NM_021839   ⟹   NP_068611
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21741,171,384 - 41,171,776 (-)NCBI
Rnor_6.01743,422,454 - 43,422,846 (-)NCBI
Rnor_5.01745,279,292 - 45,279,684 (-)NCBI
RGSC_v3.41748,289,528 - 48,289,920 (-)RGD
Celera1740,803,000 - 40,803,392 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_068611 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA42588 (Get FASTA)   NCBI Sequence Viewer  
  EDL86533 (Get FASTA)   NCBI Sequence Viewer  
  Q00728 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_068611   ⟸   NM_021839
- UniProtKB: Q00728 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000039289   ⟸   ENSRNOT00000050526
RefSeq Acc Id: ENSRNOP00000096965   ⟸   ENSRNOT00000102312
RefSeq Acc Id: ENSRNOP00000088231   ⟸   ENSRNOT00000113852
RefSeq Acc Id: ENSRNOP00000094005   ⟸   ENSRNOT00000105541

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q00728-F1-model_v2 AlphaFold Q00728 1-130 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700448
Promoter ID:EPDNEW_R10972
Type:single initiation site
Name:Hist1h2aa_1
Description:histone cluster 1 H2A family member a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01743,422,871 - 43,422,931EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3854 AgrOrtholog
BioCyc Gene G2FUF-9394 BioCyc
Ensembl Genes ENSRNOG00000048122 Ensembl
  ENSRNOG00000065352 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000088231.1 UniProtKB/Swiss-Prot
  ENSRNOP00000094005.1 UniProtKB/Swiss-Prot
  ENSRNOP00000096965 ENTREZGENE
  ENSRNOP00000096965.1 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000102312 ENTREZGENE
  ENSRNOT00000102312.1 UniProtKB/Swiss-Prot
  ENSRNOT00000105541.1 UniProtKB/Swiss-Prot
  ENSRNOT00000113852.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.20.10 UniProtKB/Swiss-Prot
InterPro Histone-fold UniProtKB/Swiss-Prot
  Histone_H2A UniProtKB/Swiss-Prot
  Histone_H2A/H2B/H3 UniProtKB/Swiss-Prot
  Histone_H2A_C UniProtKB/Swiss-Prot
  Histone_H2A_CS UniProtKB/Swiss-Prot
KEGG Report rno:24828 UniProtKB/Swiss-Prot
NCBI Gene 24828 ENTREZGENE
PANTHER HISTONE H2A TYPE 1-C UniProtKB/Swiss-Prot
  PTHR23430 UniProtKB/Swiss-Prot
Pfam Histone UniProtKB/Swiss-Prot
  Histone_H2A_C UniProtKB/Swiss-Prot
PhenoGen H2ac1 PhenoGen
PRINTS HISTONEH2A UniProtKB/Swiss-Prot
PROSITE HISTONE_H2A UniProtKB/Swiss-Prot
SMART H2A UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47113 UniProtKB/Swiss-Prot
UniProt H2A4_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-11 H2ac1  H2A clustered histone 1  Hist1h2aa  histone cluster 1 H2A family member a  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-10-12 Hist1h2aa  histone cluster 1 H2A family member a  Hist1h2aa  histone cluster 1, H2aa  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-07 Hist1h2aa  histone cluster 1, H2aa    testis-specific histone 2a  Name updated 1299863 APPROVED
2004-09-10 Hist1h2aa  testis-specific histone 2a  Th2a    Symbol and Name updated 1299863 APPROVED
2003-04-09 Th2a  testis-specific histone 2a    Testis-specific histone 2a  Name updated 629478 APPROVED
2002-06-10 Th2a  Testis-specific histone 2a      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_regulation expression is independent of DNA replication and insensitive to inhibitors of DNA synthesis in testis 632979