Spn (sialophorin) - Rat Genome Database

Name: Spn
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Spn (sialophorin) Rattus norvegicus

Analyze

Symbol:

Spn

Name:

sialophorin

RGD ID:

3750

Description:

Enables protein domain specific binding activity. Involved in several processes, including T cell receptor signaling pathway; monocyte activation; and thymocyte aggregation. Located in cell surface; cleavage furrow; and microvillus. Orthologous to human SPN (sialophorin); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 4-amino-2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Cd43; gpL115; leukocyte sialoglycoprotein; Leukosialin; leukosianin; Lsn; Lsn1; Sialophorin (gpL115 leukosianin CD43); Sialophorin (gpL115, leukosianin, CD43); W3/13 antigen

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SPN (sialophorin)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Spn (sialophorin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Spn (sialophorin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SPN (sialophorin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SPN (sialophorin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Spn (sialophorin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SPN (sialophorin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SPN (sialophorin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Spn (sialophorin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Spn (sialophorin)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SPN (sialophorin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Is Marker For:

QTLs: Bp43 Pancm1 Iddm10 Bp84

Candidate Gene For:

Pancm1

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	181,746,937 - 181,759,564 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	181,746,429 - 181,759,628 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	190,098,274 - 190,102,501 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	197,284,362 - 197,288,589 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	189,953,011 - 189,957,242 (-)	NCBI	Rnor_WKY
Rnor_6.0	1	198,572,999 - 198,585,664 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	198,572,999 - 198,577,226 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	205,563,659 - 205,576,290 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	186,388,120 - 186,391,887 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	186,538,248 - 186,541,733 (-)	NCBI
Celera	1	179,399,985 - 179,404,212 (-)	NCBI		Celera
Cytogenetic Map	1	q37	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

16p11.2 Deletion Syndrome (ISO)

atrial heart septal defect (ISO)

autism spectrum disorder (ISO)

autistic disorder (ISO)

calcinosis (ISO)

chromosome 16p11.2 deletion syndrome (ISO)

chromosome 16p11.2 duplication syndrome (ISO)

Experimental Arthritis (IMP)

genetic disease (ISO)

heart valve disease (ISO)

Neurodevelopmental Disorders (ISO)

schizophrenia (ISO)

spondylocostal dysostosis 5 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4-amino-2,6-dinitrotoluene (EXP)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (EXP)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

antirheumatic drug (ISO)

atropine (ISO)

aurantio-obtusin (ISO)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

bisphenol A (EXP)

bortezomib (ISO)

cadmium dichloride (EXP)

carbon nanotube (ISO)

chloroprene (EXP,ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (EXP)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

dextran sulfate (ISO)

dicrotophos (ISO)

digitonin (ISO)

doxorubicin (ISO)

ethanol (EXP)

folic acid (ISO)

gadodiamide hydrate (ISO)

genistein (ISO)

gentamycin (EXP)

lipopolysaccharide (ISO)

mercury dichloride (ISO)

methyl methanesulfonate (ISO)

metoprolol (ISO)

N(gamma)-nitro-L-arginine methyl ester (EXP)

naringin (EXP)

nickel atom (ISO)

ozone (ISO)

paracetamol (ISO)

paraquat (EXP)

prazosin (ISO)

progesterone (ISO)

raloxifene (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

trimethaphan (ISO)

triptonide (ISO)

tropan-3alpha-yl 3-hydroxy-2-phenylpropanoate (ISO)

trovafloxacin (ISO)

tungsten (ISO)

valproic acid (ISO)

venlafaxine hydrochloride (EXP)

vinclozolin (EXP)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic signaling pathway (ISO)

cell surface receptor signaling pathway (IBA,ISO)

chronic inflammatory response (IEP)

defense response to bacterium (IBA,ISO)

leukocyte tethering or rolling (ISO,ISS)

monocyte activation (IEP)

negative regulation of cell adhesion (ISO)

negative regulation of T cell activation (ISO)

negative regulation of T cell proliferation (ISO,ISS)

negative regulation of type IV hypersensitivity (ISO)

negative thymic T cell selection (ISO)

positive regulation of protein phosphorylation (ISO)

positive regulation of T cell migration (ISO,ISS)

positive regulation of T cell proliferation (ISO)

positive regulation of tumor necrosis factor production (ISO)

protein phosphorylation (ISO)

regulation of defense response to virus (ISO)

regulation of gene expression (IGI)

regulation of immune response (IBA,ISO)

regulation of T cell activation (IEA)

regulation of T cell migration (IEA,ISO,ISS)

response to protozoan (ISO)

T cell costimulation (ISO)

T cell proliferation (ISO)

T cell receptor signaling pathway (IGI)

T-helper 1 cell lineage commitment (ISO,ISS)

thymocyte aggregation (IMP)

Cellular Component

basement membrane (ISO)

cell surface (IDA,ISO)

cleavage furrow (IDA)

external side of plasma membrane (IBA,ISO)

extracellular space (ISO)

membrane (IDA)

membrane (IEA)

microvillus (IDA)

plasma membrane (ISO)

PML body (IEA)

uropod (ISO,ISS)

Molecular Function

heat shock protein binding (IBA,ISO)

Hsp70 protein binding (ISO)

protein binding (IPI,ISO)

protein domain specific binding (IPI)

transmembrane signaling receptor activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Identification of two subpopulations of rat monocytes expressing disparate molecular forms and quantities of CD43.	Ahuja V, etal., Cell Immunol. 1995 Jun;163(1):59-69.
2.	Protective role of sialophorin (CD43)-expressing cells in experimental Staphylococcus aureus infection.	Bremell T, etal., Infect Immun. 1994 Oct;62(10):4637-40.
3.	Genetic modifiers of Leprfa associated with variability in insulin production and susceptibility to NIDDM.	Chung WK, etal., Genomics 1997 May 1;41(3):332-44
4.	The importance of cross-linking in the homotypic aggregation of lymphocytes induced by anti-leukosialin (CD43) antibodies.	Cyster JG and Williams AF, Eur J Immunol. 1992 Oct;22(10):2565-72.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
7.	CD45 ectodomain controls interaction with GEMs and Lck activity for optimal TCR signaling.	Irles C, etal., Nat Immunol 2003 Feb;4(2):189-97. Epub 2002 Dec 23.
8.	The sequence of rat leukosialin (W3/13 antigen) reveals a molecule with O-linked glycosylation of one third of its extracellular amino acids.	Killeen N, etal., EMBO J 1987 Dec 20;6(13):4029-34.
9.	Novel quantitative trait loci for blood pressure and related traits on rat chromosomes 1, 10, and 18.	Kovacs P, etal., Biochem Biophys Res Commun 1997 Jun 18;235(2):343-8
10.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
11.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
12.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
13.	GOA pipeline	RGD automated data pipeline
14.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
16.	Rat monocytes up-regulate NKR-P1A and down-modulate CD4 and CD43 during activation in vivo: monocyte subpopulations in normal and IFN-gamma-treated rats.	Scriba A, etal., J Leukoc Biol. 1997 Dec;62(6):741-52.
17.	An antiserum raised against the recombinant cytoplasmic tail of the human CD43 glycoprotein identifies CD43 in many mammalian species.	Szlanka T, etal., Immunology. 1999 Jan;96(1):74-82.
18.	Structural basis of the cytoplasmic tail of adhesion molecule CD43 and its binding to ERM proteins.	Takai Y, etal., J Mol Biol. 2008 Sep 5;381(3):634-44. Epub 2008 Jun 7.
19.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
20.	PECAM-1 and leukosialin (CD43) expression correlate with heightened inflammation in rat adjuvant-induced arthritis.	Volin MV, etal., Exp Mol Pathol. 1999 Aug;66(3):211-9.
21.	Concentration of an integral membrane protein, CD43 (leukosialin, sialophorin), in the cleavage furrow through the interaction of its cytoplasmic domain with actin-based cytoskeletons.	Yonemura S, etal., J Cell Biol. 1993 Jan;120(2):437-49.
22.	Ezrin/radixin/moesin (ERM) proteins bind to a positively charged amino acid cluster in the juxta-membrane cytoplasmic domain of CD44, CD43, and ICAM-2.	Yonemura S, etal., J Cell Biol. 1998 Feb 23;140(4):885-95.
23.	Functional characterization of Delta3,Delta2-enoyl-CoA isomerases from rat liver.	Zhang D, etal., J Biol Chem. 2002 Mar 15;277(11):9127-32. Epub 2002 Jan 7.

Additional References at PubMed

PMID:7477353	PMID:7514104	PMID:7566153	PMID:7790813	PMID:7795661	PMID:8920854	PMID:9645617	PMID:10429671	PMID:10899905	PMID:10943842	PMID:11238599	PMID:11380685
PMID:11728336	PMID:11828253	PMID:11937524	PMID:11994475	PMID:12354383	PMID:14635057	PMID:15117976	PMID:15843532	PMID:17221298	PMID:17638845	PMID:18036228	PMID:19299737
PMID:19946888	PMID:20333395	PMID:20360400	PMID:20458337	PMID:20605918	PMID:20633027	PMID:21289089	PMID:24250818	PMID:26700769

Genomics

Comparative Map Data

Spn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	181,746,937 - 181,759,564 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	181,746,429 - 181,759,628 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	190,098,274 - 190,102,501 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	197,284,362 - 197,288,589 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	189,953,011 - 189,957,242 (-)	NCBI	Rnor_WKY
Rnor_6.0	1	198,572,999 - 198,585,664 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	198,572,999 - 198,577,226 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	205,563,659 - 205,576,290 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	186,388,120 - 186,391,887 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	186,538,248 - 186,541,733 (-)	NCBI
Celera	1	179,399,985 - 179,404,212 (-)	NCBI		Celera
Cytogenetic Map	1	q37	NCBI

SPN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	29,662,963 - 29,670,876 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	16	29,662,979 - 29,670,876 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	29,674,284 - 29,682,197 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	29,581,801 - 29,589,329 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	64,262,738 - 64,263,150	NCBI
Celera	16	73,114,178 - 73,121,702 (-)	NCBI		Celera
Cytogenetic Map	16	p11.2	NCBI
HuRef	16	27,335,753 - 27,343,116 (+)	NCBI		HuRef
CHM1_1	16	30,686,100 - 30,693,653 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	29,945,006 - 29,952,917 (+)	NCBI		T2T-CHM13v2.0

Spn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	126,731,404 - 126,743,785 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	126,731,404 - 126,736,995 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	127,123,637 - 127,145,552 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	127,132,232 - 127,137,823 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	134,276,978 - 134,281,331 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	126,924,612 - 126,928,965 (-)	NCBI		MGSCv36	mm8
Celera	7	126,982,004 - 126,986,358 (-)	NCBI		Celera
Cytogenetic Map	7	F3	NCBI
cM Map	7	69.35	NCBI

Spn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955493	7,256,505 - 7,258,607 (-)	NCBI	ChiLan1.0	ChiLan1.0

SPN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	16	30,034,739 - 30,037,033 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	30,035,243 - 30,036,445 (+)	Ensembl	panpan1.1		panPan2

SPN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	17,770,303 - 17,774,946 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	19,347,439 - 19,352,997 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	17,904,551 - 17,908,967 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	6	17,704,496 - 17,710,054 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	17,619,970 - 17,625,528 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	17,935,701 - 17,941,231 (+)	NCBI		UU_Cfam_GSD_1.0

Spn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	124,676,088 - 124,678,845 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936501	12,773,967 - 12,776,642 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	17,978,801 - 17,982,864 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	17,978,731 - 17,982,222 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	18,608,470 - 18,612,200 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	26,987,810 - 26,990,214 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	2,533,410 - 2,535,788 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624782	13,471,083 - 13,483,712 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Spn
71 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	60
Count of miRNA genes:	52
Interacting mature miRNAs:	57
Transcripts:	ENSRNOT00000055013
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	81591954	219808434	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	94494440	181830018	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	94494440	198211706	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	94494440	198324465	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	94642722	214537671	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	100357752	183970443	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	102813953	201278233	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	102813953	201278233	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	102813953	218753816	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	115540693	185145286	Rat
7794788	Mcs32	Mammary carcinoma susceptibility QTL 32	2.61		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	1	115540693	238914717	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118608292	241799120	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	118944897	199050459	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350408	181759564	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	123350408	182418476	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	123350408	182418476	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	123350408	182418476	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	123350581	201284552	Rat
71118	Thym1	Thymus enlargement QTL 1	10.17	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
724550	Thym3	Thymus enlargement QTL 3	7.82	0.001	thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	1	136829932	181829932	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	136830018	181830018	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	143506580	212458660	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	144017057	197814409	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	144267353	196383635	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	144267353	222987745	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	144267353	251128347	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	149448574	221264292	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	150700142	252085212	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	150700247	252085048	Rat
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	150700247	252085048	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	201278233	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	201278233	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	151162512	201278233	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	151162512	201278233	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	151162512	256448636	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	151162512	256448636	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	151162766	225824951	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	151646613	196646613	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	153136852	260522016	Rat
2303622	Vencon6	Ventilatory control QTL 6		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	1	154561505	199561505	Rat
4889428	Stresp24	Stress response QTL 24		0.05	heart pumping trait (VT:2000009)	absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)	1	155866514	200866514	Rat
1354618	Kidm15	Kidney mass QTL 15	5		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	1	156677124	201278233	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	156677124	218753816	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	156677124	256448636	Rat
61347	Bp197	Blood pressure QTL 197	4.2		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	1	158633083	203633083	Rat
2292222	Bp307	Blood pressure QTL 307	3.06	0.0014	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	213533942	Rat
2292220	Bp306	Blood pressure QTL 306	3.47	0.00087	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164310393	243914901	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	164747424	209747424	Rat
619613	Bp77	Blood pressure QTL 77		0.01	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	164747424	209747424	Rat
2312558	Glom17	Glomerulus QTL 17	3.9	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	166532971	191278129	Rat
1354653	Despr9	Despair related QTL 9		0.00019	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	167909849	212909849	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169112897	197261052	Rat
619614	Bp78	Blood pressure QTL 78		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	169112897	197261052	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	169537671	214537671	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	169537671	214537671	Rat
1358294	Bw37	Body weight QTL 37	5	0.000011	body mass (VT:0001259)	body weight (CMO:0000012)	1	171310381	216310381	Rat
2293689	Bss47	Bone structure and strength QTL 47	7.25	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	1	171629477	216629477	Rat
2293693	Bss22	Bone structure and strength QTL 22	33.52	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	1	171629477	216629477	Rat
2300161	Bmd43	Bone mineral density QTL 43	8.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2300174	Bmd42	Bone mineral density QTL 42	8.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	bone mineral density (CMO:0001226)	1	171629477	216629477	Rat
2300187	Bmd41	Bone mineral density QTL 41	8.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	171629477	216629477	Rat
2293654	Bss30	Bone structure and strength QTL 30	32.65	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	1	171629477	216629477	Rat
2293673	Bss27	Bone structure and strength QTL 27	18.63	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	1	171629477	216629477	Rat
2293677	Bss41	Bone structure and strength QTL 41	9.38	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	1	171629477	216629477	Rat
1549830	Bss1	Bone structure and strength QTL 1	4.8		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	1	172609619	217609619	Rat
61326	Eae6	Experimental allergic encephalomyelitis QTL 6	5.3		body mass (VT:0001259)	change in body weight (CMO:0002045)	1	172949660	181830018	Rat
631214	Bw61	Body weight QTL61	3.4	0.0001	intramuscular adipose amount (VT:0010044)	intramuscular fat area (CMO:0001162)	1	173108781	218108781	Rat
631670	Iddm10	Insulin dependent diabetes mellitus QTL 10	1.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	174133260	196383635	Rat
70163	Bw20	Body weight QTL 20	5.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	174133260	219133260	Rat
738032	Hcas5	Hepatocarcinoma susceptibility QTL 5	3.12		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	176426412	257976495	Rat
1600380	Niddm70	Non-insulin dependent diabetes mellitus QTL 70	3.1	0.0008	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	1	176550523	221550523	Rat
10059600	Bp378	Blood pressure QTL 378	3.08	0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	176869060	221869060	Rat
1354624	Cm35	Cardiac mass QTL35	5.7		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	177227632	256448636	Rat
1354652	Kidm20	Kidney mass QTL 20	4.3		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	177227632	256448636	Rat
1558658	Bw59	Body weight QTL 59	3.5	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	1	178784622	223784622	Rat
2325725	Eae31	Experimental allergic encephalomyelitis QTL 31			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	178810256	188377506	Rat
634321	Hc1	Hypercalciuria QTL 1	2.91		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	1	178810256	240830002	Rat
1578763	Kidm29	Kidney mass QTL 29	3.3	0.0001	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	1	179567751	260522016	Rat
1302787	Stl25	Serum triglyceride level QTL 25	2.7	0.0073	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	1	180359209	210702199	Rat
6903303	Scl34	Serum cholesterol QTL 34	2.5	0.0033	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	180359209	218108781	Rat
737977	Bp160	Blood pressure QTL 160		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	181133855	226133855	Rat
61378	Bp43	Blood pressure QTL 43	22.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	181746937	196383635	Rat
724559	Pancm1	Pancreatic morphology QTL 1	7.1		islet of Langerhans morphology trait (VT:0005215)	pancreatic islet damage composite score (CMO:0001156)	1	181759564	214537555	Rat

Markers in Region

D12Wox9

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	12	20,239,829 - 20,239,932	NCBI	Rnor5.0
Rnor_5.0	1	205,564,366 - 205,564,501	NCBI	Rnor5.0
Rnor_5.0	12	20,239,828 - 20,239,932	NCBI	Rnor5.0
Rnor_5.0	1	205,564,367 - 205,564,501	NCBI	Rnor5.0
RGSC_v3.4	1	186,388,833 - 186,388,966	UniSTS	RGSC3.4
RGSC_v3.4	12	16,601,685 - 16,601,788	RGD	RGSC3.4
RGSC_v3.4	1	186,388,832 - 186,388,966	RGD	RGSC3.4
RGSC_v3.4	12	16,601,686 - 16,601,788	UniSTS	RGSC3.4
RGSC_v3.1	1	186,538,713 - 186,538,847	RGD
Celera	12	17,843,923 - 17,844,025	UniSTS
Celera	1	179,400,694 - 179,400,827	UniSTS
RH 3.4 Map	12	241.0	UniSTS
Cytogenetic Map	1	q36	UniSTS

D1Wox20

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	1	205,563,901 - 205,567,387	NCBI	Rnor5.0
RGSC_v3.4	1	186,388,367 - 186,391,852	RGD	RGSC3.4
RH 3.4 Map	12	241.0	RGD
RH 2.0 Map	12	172.1	RGD

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2		28	20	19	20				1	1	9
Low	1	43	29	21		21	8	9	34	34	38	2	8
Below cutoff								2	40		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100858	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y00090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000055013 ⟹ ENSRNOP00000051894

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	181,746,429 - 181,759,628 (-)	Ensembl
Rnor_6.0 Ensembl	1	198,572,999 - 198,577,226 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000100623 ⟹ ENSRNOP00000081397

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	181,746,429 - 181,751,629 (-)	Ensembl

RefSeq Acc Id:

NM_001271086 ⟹ NP_001258015

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	181,746,937 - 181,751,164 (-)	NCBI
Rnor_6.0	1	198,572,999 - 198,577,226 (-)	NCBI
Rnor_5.0	1	205,563,659 - 205,576,290 (-)	NCBI
Celera	1	179,399,985 - 179,404,212 (-)	NCBI

Sequence:

show sequence

AGTCCTGACAAAGCCTCAGGAAGAACTGGAGGTACTCGCCCTGTCCGTGTGCCTTAGCCATTAA
GCTGGTCCCAACTCCTGCTCCCGGCTGTCACTATGGAGATGGCCTTGCATCTTCTCCTCCTCTT
TGGGGGCTTCTGGGCCCAGGTGGTGAGCCAAGAAAATCTGCCGAATACGATGACGATGTTGCCA
TTTACTCCGAATAGCGAGTCCCCAAGTACCTCTGAAGCCTTGAGTACCTACTCATCAATTGCTA
CAGTGCCAGTGACAGAGGACCCTAAGGAGAGTATCAGCCCCTGGGGGCAGACCACTGCCCCAGC
TTCCTCAATCCCCTTGGGAACTCCAGAATTGTCTTCTTTTTTTTTTACATCAGCTGGTGCCAGC
GGGAACACCCCAGTACCTGAGCTTACAACCTCTCAGGAAGTTTCCACCGAGGCATCATTAGTAC
TGTTTCCAAAATCATCAGGTGTAGCCAGTGACCCTCCTGTCACTATAACTAATCCTGCGACAAG
CAGTGCTGTGGCATCTACCTCTTTAGAAACTTTTAAAGGGACCAGTGCACCTCCTGTCACTGTG
ACAAGCTCGACCATGACCAGTGGACCCTTTGTGGCTACAACTGTAAGCTCCGAGACCAGTGGTC
CTCCAGTCACTATGGCTACTGGGTCTCTGGGGCCCTCCAAAGAGACACATGGACTCTCTGCCAC
CATAGCAACCAGTTCTGGTGAGAGTTCTAGTGTGGCCGGTGGCACCCCAGTCTTCAGTACAAAA
ATATCCACAACGTCTACCCCAAATCCCATAACCACCGTGCCACCACGCCCAGGATCGAGTGGCA
TGTTGCTGGTTTCCATGCTCATTGCCTTGACGGTGGTTTTGGTCCTTGTGGCGCTACTGCTGCT
GTGGCGCCAGAGGCAGAAGCGGAGGACTGGGGCCCTGACCCTGAGCAGAGGTGGAAAACGAAAT
GGTACGGTGGATGCCTGGGCTGGGCCAGCTCGGGTTCCTGACGAAGAGGCCACCACCGCATCAG
GGTCAGGGGGCAACAAGAGCTCCGGAGCGCCGGAGACGGATGGCTCCGGGCAGCGGCCCACGCT
CACCACTTTCTTCAGCAGACGGAAGTCTCGCCAGGGCTCGGTAGCACTAGAAGAGCTGAAGCCT
GGGACGGGTCCCAACCTGAAGGGGGAGGAAGAGCCTCTGGTAGGCAGTGAGGACGAAGCTGTGG
AAACCCCAACTTCTGACGGGCCACAAGCCAAAGATGGGGCTGCACCTCAATCCCTATGAGTAAC
GGTATTCATCTAGTCTGCTCCTTGACCCCAGATCCTGCTGTCAGCTGCCTCTCACTCTGCATTT
GTGAATATTTGTGGGCCAGGTCCATTCGTTCATTCATTATTCAGCCATTCATTCCTCTCCAACC
CCCGCTGTTTTCCACCTCCCCTTCCTCTGTGCTCCCTTTGAATCTCCAGAAGATAAGCTTAGTT
GACCCACATTTTCCAAGCATCCCCCTTGGAATGCTGGGATCCGACAAGAAGAATGAAAATGATA
AGCCAGAAAACTCCGGAGGAGGGGCCCCCTGAGGACTGCCTCTCAACTACCATTTGCTTTGGGG
ACAGCTTAGAGCTGGATGTAGCCATTCAGTTTGCTCTTGGGTGAACTGTGACCTGTGACTTTTC
CCAGAGCACTCCGATTTTGGGCTGGCCGGTAGCTGCTTGGGGTAGCCTGCCAGAGATCAGTCAC
TTCTCCTGGAGGTGGGGATGGGGAGACTTCCTGGCTCCATGTGGTCCCTGCACCTGTTTTGTCC
ACTCGGAAGTATGGTTTATGTGCAAGATAGGACAATTTAGGCGATGGCTGTGAACAGTACTGGT
GAGTATAGACCATGGAGAGAGCAGGGGAGATGCAAAAGGAGGGGCACGGGAGCTGCCGAGCCCT
CAGATCCCTTCATTGTGCTCAGACAGGATATGGCTGAAAACCTAAGTTTGTCTGTAGTTCCCCA
AAAGAATGCAAACATGATGGGGACTAAATGTCTCCATACTTGTGCCATCAAGAATGAGTTCTTC
AGCTTAGCTGCCACAGCCTTTCCTCAAAGGCTCCCTCAGACCAGCACACACCAAGCACCCATGC
AAGAAGGGGAGAAGAATCAGCCCAATGCAGGGACTGGGTGGTGCAAAACCACTGCTTTTGATGA
TGCTTTCCCTACAGGCTCAATTTGTCCGTTTCCTCTGAAGTCCTTCCCATCTCTGGAATAAGAA
AGAGTTAAATGAAAGACAGGCTCAGGGGGTGGGACATGGATGCCCAAAGGGTCTGAGGTAGAGA
GGGGACAGACCACAATTGTGCTGTTTCTGACTCTGATACCAGCCCGGCTCGTGGTCCAAAGCTG
GTTGCTGGAAGAGCTGTGCAAGGGGAAGTCGTTGAGTCAGAGGACACTGTCCTTGAGAACAGCC
TGACCTACAAAAAGATGTGTGTGTGCGGCTGTGTGGCCTGGGTGGAAAAGGGGAAGGTGGGTAG
GAGGGAGGGGACGAGGAGTGGAAAGGGACAAGGATCAGCTGCCACCACATCATCATCTCCTCCC
CAAGTCTGTGGGAAGAGGAAGGGCCAAGATGGGCACACCTGAGCCATACCGAACCCATTTCTTA
TAGGCGCAGTGTGGAGCAGCTCTAACAGATGGCTAGTGAGTTGCAAGTGTCCCTTAAGGAACAT
AACAACTGTTGTGGCTGATTTTTGCCAAACCGAATGTCCCTATTTCAGGCTTAGAGGAGAATGT
TACCAAGCTGAGAGGTCAATGGCTCTACCCATCATGTTCCACTGACACTCCTGAGGTATTACAG
GTTTCCAGGTACAGGGAGGAAGACAAGGAAATGGGGTAGGGATGGTGGATGGCACGCAATAGGA
CCTCAGCCCTGACAGACAAAATGTCACAAGAGGCTAGGACATGATTGGTATTCCACCTCCGAAG
GAGGACAAGGAAGCTTAATGTTTGTCCCAGGGTCTTGGCCATATCTCTCTTTCTAGTGGCTCCA
GTACCTGGCAAGCAGCAAGGACTGAGTGCATGCTCCGATGGATGGATGGATGGATGGATGGATG
GATGGATGGATGGATGTTGGATGGATGGATGGATGGATGAATGGACAGATGGATAGATGAGGTA
TTGGCAGCTAGCAAGAGAGAAGGCATTTAACACAAAGATTAGTAATGCAAAAATATATAAGTGA
GTGGAACAGAGATCATGGTGGATACACACAGCTGTCTTTCAGCTCAGGAGAGCGAGCACCCAGT
AAGCAATAGAAAAGCAAAAATAGAAGAAGAAAAAGAAGAAAAAAGCAGGCAAACAGAAACAGGG
AAATGTAAAACACAGAGACCGTTTGAACTCCGTCAGTTATGAAACCATAGTAAGTGGCTTGTGT
TTGTGACATCCTGGCCTTGTCTTCAGAAATGTGTAATGACTTCAGAAATGCCTGCGGCTGACAC
GGGGTAGGGAAGTAAATGATCTGTAAATACATGTGTGTTATTGCATTTGTGATAGCAGCTACAT
CCTGAATGTTTAGTACGGTCCTCCTAAAGGGGAATTTAAGTGTGATTTTTTTCACCTAACTTGT
CTTTGTTTTACACAATAAATGTCTTTACTTTTACAGTTATGAAAAATATTGGTGAGGGGGCTGG
GAAATGGCTCATTGGTTACGAGCACCGGTTGCTCTTCCAGGGGTCCCAGGTTCTATTCCCAGCA
CCTAAGATGGCCGCTCCCAAATGTTTGCAACTCCAGTTCCAGGAGATCCAGTGCCCTGTTCTGA
CCCTCAAGGGCACAAGGTACACAGGTGGCACACATACATACGCACAGGCAAAATATCTATATGC
ATAAAAATAAATCTTTTTAAAAATGG

hide sequence

RefSeq Acc Id:

XM_006230213 ⟹ XP_006230275

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	181,747,180 - 181,759,564 (-)	NCBI
Rnor_6.0	1	198,573,000 - 198,585,664 (-)	NCBI
Rnor_5.0	1	205,563,659 - 205,576,290 (-)	NCBI

Sequence:

show sequence

ATTTGCAGACAGCTAGAAAGACAACAGACTTCCTGCTCCATCACTCTCTGCCCTATGCCCTGAG
ACACAGTCTATCATCTTGATGGCATCTAGAGTCCCCTAGAAAACAGCCTCGGGCACTGGGAAGA
CCTACGTTGCAAGCAGGCTTCCACAGTTCCGTGCCCTTGGGTCCTGAGCTGCACAAAGGGCGGA
AGGAAGGAAGGTGACTGAGGAGGAACACTTGACCCTCTGCTTCCTGGCTCTGGATTCAAGGTGA
GCAGTGGTCTCAAGCTCCAGCTGTCAAGACTCCCACCACAGTGGACCTAGCTGTCCCAACTCCT
GCTCCCGGCTGTCACTATGGAGATGGCCTTGCATCTTCTCCTCCTCTTTGGGGGCTTCTGGGCC
CAGGTGGTGAGCCAAGAAAATCTGCCGAATACGATGACGATGTTGCCATTTACTCCGAATAGCG
AGTCCCCAAGTACCTCTGAAGCCTTGAGTACCTACTCATCAATTGCTACAGTGCCAGTGACAGA
GGACCCTAAGGAGAGTATCAGCCCCTGGGGGCAGACCACTGCCCCAGCTTCCTCAATCCCCTTG
GGAACTCCAGAATTGTCTTCTTTTTTTTTTACATCAGCTGGTGCCAGCGGGAACACCCCAGTAC
CTGAGCTTACAACCTCTCAGGAAGTTTCCACCGAGGCATCATTAGTACTGTTTCCAAAATCATC
AGGTGTAGCCAGTGACCCTCCTGTCACTATAACTAATCCTGCGACAAGCAGTGCTGTGGCATCT
ACCTCTTTAGAAACTTTTAAAGGGACCAGTGCACCTCCTGTCACTGTGACAAGCTCGACCATGA
CCAGTGGACCCTTTGTGGCTACAACTGTAAGCTCCGAGACCAGTGGTCCTCCAGTCACTATGGC
TACTGGGTCTCTGGGGCCCTCCAAAGAGACACATGGACTCTCTGCCACCATAGCAACCAGTTCT
GGTGAGAGTTCTAGTGTGGCCGGTGGCACCCCAGTCTTCAGTACAAAAATATCCACAACGTCTA
CCCCAAATCCCATAACCACCGTGCCACCACGCCCAGGATCGAGTGGCATGTTGCTGGTTTCCAT
GCTCATTGCCTTGACGGTGGTTTTGGTCCTTGTGGCGCTACTGCTGCTGTGGCGCCAGAGGCAG
AAGCGGAGGACTGGGGCCCTGACCCTGAGCAGAGGTGGAAAACGAAATGGTACGGTGGATGCCT
GGGCTGGGCCAGCTCGGGTTCCTGACGAAGAGGCCACCACCGCATCAGGGTCAGGGGGCAACAA
GAGCTCCGGAGCGCCGGAGACGGATGGCTCCGGGCAGCGGCCCACGCTCACCACTTTCTTCAGC
AGACGGAAGTCTCGCCAGGGCTCGGTAGCACTAGAAGAGCTGAAGCCTGGGACGGGTCCCAACC
TGAAGGGGGAGGAAGAGCCTCTGGTAGGCAGTGAGGACGAAGCTGTGGAAACCCCAACTTCTGA
CGGGCCACAAGCCAAAGATGGGGCTGCACCTCAATCCCTATGAGTAACGGTATTCATCTAGTCT
GCTCCTTGACCCCAGATCCTGCTGTCAGCTGCCTCTCACTCTGCATTTGTGAATATTTGTGGGC
CAGGTCCATTCGTTCATTCATTATTCAGCCATTCATTCCTCTCCAACCCCCGCTGTTTTCCACC
TCCCCTTCCTCTGTGCTCCCTTTGAATCTCCAGAAGATAAGCTTAGTTGACCCACATTTTCCAA
GCATCCCCCTTGGAATGCTGGGATCCGACAAGAAGAATGAAAATGATAAGCCAGAAAACTCCGG
AGGAGGGGCCCCCTGAGGACTGCCTCTCAACTACCATTTGCTTTGGGGACAGCTTAGAGCTGGA
TGTAGCCATTCAGTTTGCTCTTGGGTGAACTGTGACCTGTGACTTTTCCCAGAGCACTCCGATT
TTGGGCTGGCCGGTAGCTGCTTGGGGTAGCCTGCCAGAGATCAGTCACTTCTCCTGGAGGTGGG
GATGGGGAGACTTCCTGGCTCCATGTGGTCCCTGCACCTGTTTTGTCCACTCGGAAGTATGGTT
TATGTGCAAGATAGGACAATTTAGGCGATGGCTGTGAACAGTACTGGTGAGTATAGACCATGGA
GAGAGCAGGGGAGATGCAAAAGGAGGGGCACGGGAGCTGCCGAGCCCTCAGATCCCTTCATTGT
GCTCAGACAGGATATGGCTGAAAACCTAAGTTTGTCTGTAGTTCCCCAAAAGAATGCAAACATG
ATGGGGACTAAATGTCTCCATACTTGTGCCATCAAGAATGAGTTCTTCAGCTTAGCTGCCACAG
CCTTTCCTCAAAGGCTCCCTCAGACCAGCACACACCAAGCACCCATGCAAGAAGGGGAGAAGAA
TCAGCCCAATGCAGGGACTGGGTGGTGCAAAACCACTGCTTTTGATGATGCTTTCCCTACAGGC
TCAATTTGTCCGTTTCCTCTGAAGTCCTTCCCATCTCTGGAATAAGAAAGAGTTAAATGAAAGA
CAGGCTCAGGGGGTGGGACATGGATGCCCAAAGGGTCTGAGGTAGAGAGGGGACAGACCACAAT
TGTGCTGTTTCTGACTCTGATACCAGCCCGGCTCGTGGTCCAAAGCTGGTTGCTGGAAGAGCTG
TGCAAGGGGAAGTCGTTGAGTCAGAGGACACTGTCCTTGAGAACAGCCTGACCTACAAAAAGAT
GTGTGTGTGCGGCTGTGTGGCCTGGGTGGAAAAGGGGAAGGTGGGTAGGAGGGAGGGGACGAGG
AGTGGAAAGGGACAAGGATCAGCTGCCACCACATCATCATCTCCTCCCCAAGTCTGTGGGAAGA
GGAAGGGCCAAGATGGGCACACCTGAGCCATACCGAACCCATTTCTTATAGGCGCAGTGTGGAG
CAGCTCTAACAGATGGCTAGTGAGTTGCAAGTGTCCCTTAAGGAACATAACAACTGTTGTGGCT
GATTTTTGCCAAACCGAATGTCCCTATTTCAGGCTTAGAGGAGAATGTTACCAAGCTGAGAGGT
CAATGGCTCTACCCATCATGTTCCACTGACACTCCTGAGGTATTACAGGTTTCCAGGTACAGGG
AGGAAGACAAGGAAATGGGGTAGGGATGGTGGATGGCACGCAATAGGACCTCAGCCCTGACAGA
CAAAATGTCACAAGAGGCTAGGACATGATTGGTATTCCACCTCCGAAGGAGGACAAGGAAGCTT
AATGTTTGTCCCAGGGTCTTGGCCATATCTCTCTTTCTAGTGGCTCCAGTACCTGGCAAGCAGC
AAGGACTGAGTGCATGCTCCGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATG
TTGGATGGATGGATGGATGGATGAATGGACAGATGGATAGATGAGGTATTGGCAGCTAGCAAGA
GAGAAGGCATTTAACACAAAGATTAGTAATGCAAAAATATATAAGTGAGTGGAACAGAGATCAT
GGTGGATACACACAGCTGTCTTTCAGCTCAGGAGAGCGAGCACCCAGTAAGCAATAGAAAAGCA
AAAATAGAAGAAGAAAAAGAAGAAAAAAGCAGGCAAACAGAAACAGGGAAATGTAAAACACAGA
GACCGTTTGAACTCCGTCAGTTATGAAACCATAGTAAGTGGCTTGTGTTTGTGACATCCTGGCC
TTGTCTTCAGAAATGTGTAATGACTTCAGAAATGCCTGCGGCTGACACGGGGTAGGGAAGTAAA
TGATCTGTAAATACATGTGTGTTATTGCATTTGTGATAGCAGCTACATCCTGAATGTTTAGTAC
GGTCCTCCTAAAGGGGAATTTAAGTGTGATTTTTTTCACCTAACTTGTCTTTGTTTTACACAAT
AAATGTCTTTACTTTTACAGTTATGAAAAATATTGGTGAGGGGGCTGGGAAATGGCTCATTGGT
TACGAGCACCGGTTGCTCTTCCAGGGGTCCCAGGTTCTATTCCCAGCACCTAAGATGGCCGCTC
CCAAATGTTTGCAACTCCAGTTCCAGGAGATCCAGTGCCCTGTTCTGACCCTCAAGGGCACAAG
GTACACAGGTGGCACACATACATACGCACAGGCAAAATATCTATATGCATAAAAATAAATCTTT
TTAAAAATG

hide sequence

RefSeq Acc Id:

XM_008759858 ⟹ XP_008758080

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	181,747,180 - 181,751,166 (-)	NCBI
Rnor_6.0	1	198,573,000 - 198,577,792 (-)	NCBI

Sequence:

show sequence

TGAGCGGGTCTCCTTCAAGGGCTCCAAACCTCTGGGCCATCCCTCCAGCCCTCCTAGTTCTCTA
AGACCCTAGCATGTGCAGTGTTAGTACCATCTTAAAAGGGGGCCGGGGGGGGGGCGACACCCCA
GGAGTGACCTCAATTCCTTGTGGTTCTGGCAGGGTTCAGCAACCTGAAAAACCTTTCAGGACCA
GGACCATGAGCAGAGTCAAAAGGCTCCCCTGGCCGGGCTACTTCCTAGGAGCTCTTCGGCAGGA
AATGTACCTACCATCTCAGGTGCTAGCCAAACATCTTGAGGGACAGCAGATGGAAAGGAAACCG
TTCTCCGCTCCATGTCTTCCACTCCATCCCCTAGTCGTCCCTACCCATCTTTGACCCTTTGACA
TTCTATACTCCAGTGAAAACCTAAGAATTCCCATTCTGGACCCCGAGCACCCCTTCATGCTGCT
ACTGAACCCTTGGGTCCCCCAGTCAACTGCGGGAGAAGGAATGGGTGGGGCAGGATGCAGGGGT
GGAGTGGGTGGAGCCAAGACCCACTTCCTTTCCCCCTGGGGCTCAGTCTGCCCCAGTCCTGACA
AAGCCTCAGGAAGAACTGGAGGTACTCGCCCTGTCCGTGTGCCTTAGCCATTAAGCTGGTAAGA
CATCTGATCTAGGTCCCAACTCCTGCTCCCGGCTGTCACTATGGAGATGGCCTTGCATCTTCTC
CTCCTCTTTGGGGGCTTCTGGGCCCAGGTGGTGAGCCAAGAAAATCTGCCGAATACGATGACGA
TGTTGCCATTTACTCCGAATAGCGAGTCCCCAAGTACCTCTGAAGCCTTGAGTACCTACTCATC
AATTGCTACAGTGCCAGTGACAGAGGACCCTAAGGAGAGTATCAGCCCCTGGGGGCAGACCACT
GCCCCAGCTTCCTCAATCCCCTTGGGAACTCCAGAATTGTCTTCTTTTTTTTTTACATCAGCTG
GTGCCAGCGGGAACACCCCAGTACCTGAGCTTACAACCTCTCAGGAAGTTTCCACCGAGGCATC
ATTAGTACTGTTTCCAAAATCATCAGGTGTAGCCAGTGACCCTCCTGTCACTATAACTAATCCT
GCGACAAGCAGTGCTGTGGCATCTACCTCTTTAGAAACTTTTAAAGGGACCAGTGCACCTCCTG
TCACTGTGACAAGCTCGACCATGACCAGTGGACCCTTTGTGGCTACAACTGTAAGCTCCGAGAC
CAGTGGTCCTCCAGTCACTATGGCTACTGGGTCTCTGGGGCCCTCCAAAGAGACACATGGACTC
TCTGCCACCATAGCAACCAGTTCTGGTGAGAGTTCTAGTGTGGCCGGTGGCACCCCAGTCTTCA
GTACAAAAATATCCACAACGTCTACCCCAAATCCCATAACCACCGTGCCACCACGCCCAGGATC
GAGTGGCATGTTGCTGGTTTCCATGCTCATTGCCTTGACGGTGGTTTTGGTCCTTGTGGCGCTA
CTGCTGCTGTGGCGCCAGAGGCAGAAGCGGAGGACTGGGGCCCTGACCCTGAGCAGAGGTGGAA
AACGAAATGGTACGGTGGATGCCTGGGCTGGGCCAGCTCGGGTTCCTGACGAAGAGGCCACCAC
CGCATCAGGGTCAGGGGGCAACAAGAGCTCCGGAGCGCCGGAGACGGATGGCTCCGGGCAGCGG
CCCACGCTCACCACTTTCTTCAGCAGACGGAAGTCTCGCCAGGGCTCGGTAGCACTAGAAGAGC
TGAAGCCTGGGACGGGTCCCAACCTGAAGGGGGAGGAAGAGCCTCTGGTAGGCAGTGAGGACGA
AGCTGTGGAAACCCCAACTTCTGACGGGCCACAAGCCAAAGATGGGGCTGCACCTCAATCCCTA
TGAGTAACGGTATTCATCTAGTCTGCTCCTTGACCCCAGATCCTGCTGTCAGCTGCCTCTCACT
CTGCATTTGTGAATATTTGTGGGCCAGGTCCATTCGTTCATTCATTATTCAGCCATTCATTCCT
CTCCAACCCCCGCTGTTTTCCACCTCCCCTTCCTCTGTGCTCCCTTTGAATCTCCAGAAGATAA
GCTTAGTTGACCCACATTTTCCAAGCATCCCCCTTGGAATGCTGGGATCCGACAAGAAGAATGA
AAATGATAAGCCAGAAAACTCCGGAGGAGGGGCCCCCTGAGGACTGCCTCTCAACTACCATTTG
CTTTGGGGACAGCTTAGAGCTGGATGTAGCCATTCAGTTTGCTCTTGGGTGAACTGTGACCTGT
GACTTTTCCCAGAGCACTCCGATTTTGGGCTGGCCGGTAGCTGCTTGGGGTAGCCTGCCAGAGA
TCAGTCACTTCTCCTGGAGGTGGGGATGGGGAGACTTCCTGGCTCCATGTGGTCCCTGCACCTG
TTTTGTCCACTCGGAAGTATGGTTTATGTGCAAGATAGGACAATTTAGGCGATGGCTGTGAACA
GTACTGGTGAGTATAGACCATGGAGAGAGCAGGGGAGATGCAAAAGGAGGGGCACGGGAGCTGC
CGAGCCCTCAGATCCCTTCATTGTGCTCAGACAGGATATGGCTGAAAACCTAAGTTTGTCTGTA
GTTCCCCAAAAGAATGCAAACATGATGGGGACTAAATGTCTCCATACTTGTGCCATCAAGAATG
AGTTCTTCAGCTTAGCTGCCACAGCCTTTCCTCAAAGGCTCCCTCAGACCAGCACACACCAAGC
ACCCATGCAAGAAGGGGAGAAGAATCAGCCCAATGCAGGGACTGGGTGGTGCAAAACCACTGCT
TTTGATGATGCTTTCCCTACAGGCTCAATTTGTCCGTTTCCTCTGAAGTCCTTCCCATCTCTGG
AATAAGAAAGAGTTAAATGAAAGACAGGCTCAGGGGGTGGGACATGGATGCCCAAAGGGTCTGA
GGTAGAGAGGGGACAGACCACAATTGTGCTGTTTCTGACTCTGATACCAGCCCGGCTCGTGGTC
CAAAGCTGGTTGCTGGAAGAGCTGTGCAAGGGGAAGTCGTTGAGTCAGAGGACACTGTCCTTGA
GAACAGCCTGACCTACAAAAAGATGTGTGTGTGCGGCTGTGTGGCCTGGGTGGAAAAGGGGAAG
GTGGGTAGGAGGGAGGGGACGAGGAGTGGAAAGGGACAAGGATCAGCTGCCACCACATCATCAT
CTCCTCCCCAAGTCTGTGGGAAGAGGAAGGGCCAAGATGGGCACACCTGAGCCATACCGAACCC
ATTTCTTATAGGCGCAGTGTGGAGCAGCTCTAACAGATGGCTAGTGAGTTGCAAGTGTCCCTTA
AGGAACATAACAACTGTTGTGGCTGATTTTTGCCAAACCGAATGTCCCTATTTCAGGCTTAGAG
GAGAATGTTACCAAGCTGAGAGGTCAATGGCTCTACCCATCATGTTCCACTGACACTCCTGAGG
TATTACAGGTTTCCAGGTACAGGGAGGAAGACAAGGAAATGGGGTAGGGATGGTGGATGGCACG
CAATAGGACCTCAGCCCTGACAGACAAAATGTCACAAGAGGCTAGGACATGATTGGTATTCCAC
CTCCGAAGGAGGACAAGGAAGCTTAATGTTTGTCCCAGGGTCTTGGCCATATCTCTCTTTCTAG
TGGCTCCAGTACCTGGCAAGCAGCAAGGACTGAGTGCATGCTCCGATGGATGGATGGATGGATG
GATGGATGGATGGATGGATGGATGTTGGATGGATGGATGGATGGATGAATGGACAGATGGATAG
ATGAGGTATTGGCAGCTAGCAAGAGAGAAGGCATTTAACACAAAGATTAGTAATGCAAAAATAT
ATAAGTGAGTGGAACAGAGATCATGGTGGATACACACAGCTGTCTTTCAGCTCAGGAGAGCGAG
CACCCAGTAAGCAATAGAAAAGCAAAAATAGAAGAAGAAAAAGAAGAAAAAAGCAGGCAAACAG
AAACAGGGAAATGTAAAACACAGAGACCGTTTGAACTCCGTCAGTTATGAAACCATAGTAAGTG
GCTTGTGTTTGTGACATCCTGGCCTTGTCTTCAGAAATGTGTAATGACTTCAGAAATGCCTGCG
GCTGACACGGGGTAGGGAAGTAAATGATCTGTAAATACATGTGTGTTATTGCATTTGTGATAGC
AGCTACATCCTGAATGTTTAGTACGGTCCTCCTAAAGGGGAATTTAAGTGTGATTTTTTTCACC
TAACTTGTCTTTGTTTTACACAATAAATGTCTTTACTTTTACAGTTATGAAAAATATTGGTGAG
GGGGCTGGGAAATGGCTCATTGGTTACGAGCACCGGTTGCTCTTCCAGGGGTCCCAGGTTCTAT
TCCCAGCACCTAAGATGGCCGCTCCCAAATGTTTGCAACTCCAGTTCCAGGAGATCCAGTGCCC
TGTTCTGACCCTCAAGGGCACAAGGTACACAGGTGGCACACATACATACGCACAGGCAAAATAT
CTATATGCATAAAAATAAATCTTTTTAAAAATG

hide sequence

RefSeq Acc Id:

XM_039100858 ⟹ XP_038956786

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	181,747,180 - 181,759,564 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258015	(Get FASTA)	NCBI Sequence Viewer
	XP_006230275	(Get FASTA)	NCBI Sequence Viewer
	XP_008758080	(Get FASTA)	NCBI Sequence Viewer
	XP_038956786	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAA68281	(Get FASTA)	NCBI Sequence Viewer
	EDM17312	(Get FASTA)	NCBI Sequence Viewer
	EDM17313	(Get FASTA)	NCBI Sequence Viewer
	P13838	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001258015 ⟸ NM_001271086
- Peptide Label:	precursor
- UniProtKB:	R9PXZ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEMALHLLLLFGGFWAQVVSQENLPNTMTMLPFTPNSESPSTSEALSTYSSIATVPVTEDPKES ISPWGQTTAPASSIPLGTPELSSFFFTSAGASGNTPVPELTTSQEVSTEASLVLFPKSSGVASD PPVTITNPATSSAVASTSLETFKGTSAPPVTVTSSTMTSGPFVATTVSSETSGPPVTMATGSLG PSKETHGLSATIATSSGESSSVAGGTPVFSTKISTTSTPNPITTVPPRPGSSGMLLVSMLIALT VVLVLVALLLLWRQRQKRRTGALTLSRGGKRNGTVDAWAGPARVPDEEATTASGSGGNKSSGAP ETDGSGQRPTLTTFFSRRKSRQGSVALEELKPGTGPNLKGEEEPLVGSEDEAVETPTSDGPQAK DGAAPQSL hide sequence

RefSeq Acc Id:	XP_006230275 ⟸ XM_006230213
- Peptide Label:	isoform X1
- UniProtKB:	R9PXZ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEMALHLLLLFGGFWAQVVSQENLPNTMTMLPFTPNSESPSTSEALSTYSSIATVPVTEDPKES ISPWGQTTAPASSIPLGTPELSSFFFTSAGASGNTPVPELTTSQEVSTEASLVLFPKSSGVASD PPVTITNPATSSAVASTSLETFKGTSAPPVTVTSSTMTSGPFVATTVSSETSGPPVTMATGSLG PSKETHGLSATIATSSGESSSVAGGTPVFSTKISTTSTPNPITTVPPRPGSSGMLLVSMLIALT VVLVLVALLLLWRQRQKRRTGALTLSRGGKRNGTVDAWAGPARVPDEEATTASGSGGNKSSGAP ETDGSGQRPTLTTFFSRRKSRQGSVALEELKPGTGPNLKGEEEPLVGSEDEAVETPTSDGPQAK DGAAPQSL hide sequence

RefSeq Acc Id:	XP_008758080 ⟸ XM_008759858
- Peptide Label:	isoform X1
- UniProtKB:	R9PXZ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEMALHLLLLFGGFWAQVVSQENLPNTMTMLPFTPNSESPSTSEALSTYSSIATVPVTEDPKES ISPWGQTTAPASSIPLGTPELSSFFFTSAGASGNTPVPELTTSQEVSTEASLVLFPKSSGVASD PPVTITNPATSSAVASTSLETFKGTSAPPVTVTSSTMTSGPFVATTVSSETSGPPVTMATGSLG PSKETHGLSATIATSSGESSSVAGGTPVFSTKISTTSTPNPITTVPPRPGSSGMLLVSMLIALT VVLVLVALLLLWRQRQKRRTGALTLSRGGKRNGTVDAWAGPARVPDEEATTASGSGGNKSSGAP ETDGSGQRPTLTTFFSRRKSRQGSVALEELKPGTGPNLKGEEEPLVGSEDEAVETPTSDGPQAK DGAAPQSL hide sequence

RefSeq Acc Id:

ENSRNOP00000051894 ⟸ ENSRNOT00000055013

RefSeq Acc Id:	XP_038956786 ⟸ XM_039100858
- Peptide Label:	isoform X1
- UniProtKB:	R9PXZ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000081397 ⟸ ENSRNOT00000100623

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P13838-F1-model_v2	AlphaFold	P13838	1-378	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690426

Promoter ID:

EPDNEW_R950

Type:

single initiation site

Name:

Spn_1

Description:

sialophorin

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	198,577,226 - 198,577,286	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3750	AgrOrtholog
BioCyc Gene	G2FUF-57387	BioCyc
Ensembl Genes	ENSRNOG00000036711	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000051894	ENTREZGENE
	ENSRNOP00000051894.4	UniProtKB/TrEMBL
	ENSRNOP00000081397	ENTREZGENE
	ENSRNOP00000081397.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000055013	ENTREZGENE
	ENSRNOT00000055013.5	UniProtKB/TrEMBL
	ENSRNOT00000100623	ENTREZGENE
	ENSRNOT00000100623.1	UniProtKB/TrEMBL
InterPro	Leukosialin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:24796	UniProtKB/TrEMBL
NCBI Gene	24796	ENTREZGENE
PANTHER	LEUKOSIALIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR35265	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Spn	PhenoGen
TIGR	TC207090
UniProt	LEUK_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	R9PXZ7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2003-04-09	Spn	sialophorin			Name updated	629478	APPROVED
2003-03-07	Spn	sialophorin	Lsn	Leukosialin	Data Merged	628472	PROVISIONAL
2003-03-07		sialophorin	Spn	Sialophorin (gpL115, leukosianin, CD43)	Symbol and Name updated to reflect Human and Mouse nomenclature	61478	PENDING
2002-06-10	Spn	Sialophorin (gpL115, leukosianin, CD43)			Symbol and Name status set to approved	70586	APPROVED
2002-06-10	Lsn	Leukosialin			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_product	a third of the extracellular amino acids may be O-glycosylated	729976
gene_protein	371 amino acids	729976

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD