Ncor1 (nuclear receptor co-repressor 1) - Rat Genome Database

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Gene: Ncor1 (nuclear receptor co-repressor 1) Rattus norvegicus
Analyze
Symbol: Ncor1
Name: nuclear receptor co-repressor 1
RGD ID: 3612
Description: Enables several functions, including histone deacetylase binding activity; nuclear receptor binding activity; and peroxisome proliferator activated receptor binding activity. Involved in several processes, including lactation; negative regulation of macromolecule biosynthetic process; and skeletal muscle tissue development. Located in perinuclear region of cytoplasm. Used to study anxiety disorder and polycystic ovary syndrome. Biomarker of hypothyroidism and polycystic ovary syndrome. Orthologous to human NCOR1 (nuclear receptor corepressor 1); PARTICIPATES IN aldosterone signaling pathway; androgen signaling pathway; cortisol signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC116328; N-CoR; N-Cor/SMRT corepressor Rip13; N-Cor/SMRT corepressor, Rip13; N-CoR1; NCoR; nuclear receptor corepressor 1; Rxrip13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Pia26
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,498,852 - 47,641,612 (-)NCBIGRCr8
mRatBN7.21046,999,536 - 47,142,294 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,999,536 - 47,141,032 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,703,300 - 51,844,635 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,193,851 - 51,335,192 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,697,258 - 46,838,598 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01048,629,121 - 48,772,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1048,629,121 - 48,772,890 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,417,490 - 48,559,309 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,481,110 - 48,628,538 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11048,495,233 - 48,511,932 (-)NCBI
Celera1046,245,514 - 46,388,593 (-)NCBICelera
Cytogenetic Map10q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3,3',5,5'-tetraiodothyroacetic acid  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
afimoxifene  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
alpha-tocotrienol  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
aspartame  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-tocotrienol  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
butanal  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
caffeine  (ISO)
calciol  (EXP)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
chenodeoxycholic acid  (ISO)
chloroprene  (EXP)
choline  (ISO)
cisplatin  (ISO)
clotrimazole  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
cyproterone acetate  (ISO)
D-glucose  (ISO)
decabromodiphenyl ether  (EXP)
delta-tocotrienol  (ISO)
dexamethasone  (ISO)
dichloromethane  (ISO)
dicrotophos  (ISO)
Dicyclohexyl phthalate  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
glafenine  (EXP)
glucose  (ISO)
hexadecanoic acid  (ISO)
hydralazine  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lithocholic acid  (ISO)
methapyrilene  (EXP)
methimazole  (EXP)
methoxychlor  (ISO)
methylseleninic acid  (ISO)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monosodium L-glutamate  (ISO)
N(4)-hydroxycytidine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
nefazodone  (EXP)
nicotinamide  (ISO)
okadaic acid  (ISO)
ormeloxifene  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paricalcitol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (EXP)
phenobarbital  (ISO)
phosphorus atom  (ISO)
phosphorus(.)  (ISO)
pirinixic acid  (ISO)
PK-11195  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
quercetin  (ISO)
rifampicin  (ISO)
sarin  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP)
thyroxine  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
tributylstannane  (EXP)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Effects of neonatal exposure to bisphenol A on steroid regulation of vascular endothelial growth factor expression and endothelial cell proliferation in the adult rat uterus. Bosquiazzo VL, etal., Biol Reprod. 2010 Jan;82(1):86-95. Epub 2009 Aug 19.
2. Aberrant interactions of transcriptional repressor proteins with the Huntington's disease gene product, huntingtin. Boutell JM, etal., Hum Mol Genet. 1999 Sep;8(9):1647-55.
3. Androgen receptor coregulators and their involvement in the development and progression of prostate cancer. Chmelar R, etal., Int J Cancer. 2007 Feb 15;120(4):719-33.
4. Expression of estrogen receptor co-regulators SRC-1, RIP140 and NCoR and their interaction with estrogen receptor in rat uterus, under the influence of ormeloxifene. Daverey A, etal., J Steroid Biochem Mol Biol. 2009 Aug;116(1-2):93-101. Epub 2009 May 19.
5. Nuclear receptor co-repressor is required to maintain proliferation of normal intestinal epithelial cells in culture and down-modulates the expression of pigment epithelium-derived factor. Doyon G, etal., J Biol Chem. 2009 Sep 11;284(37):25220-9. Epub 2009 Jul 16.
6. Ataxin-3 represses transcription via chromatin binding, interaction with histone deacetylase 3, and histone deacetylation. Evert BO, etal., J Neurosci. 2006 Nov 1;26(44):11474-86.
7. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
8. Role of estrogen receptor alpha transcriptional coregulators in tamoxifen resistance in breast cancer. Girault I, etal., Maturitas. 2006 Jul 20;54(4):342-51. Epub 2006 Jul 5.
9. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
10. Coregulators in nuclear estrogen receptor action: from concept to therapeutic targeting. Hall JM and McDonnell DP, Mol Interv. 2005 Dec;5(6):343-57.
11. A complex containing N-CoR, mSin3 and histone deacetylase mediates transcriptional repression. Heinzel T, etal., Nature. 1997 May 1;387(6628):43-8.
12. N-CoR controls differentiation of neural stem cells into astrocytes. Hermanson O, etal., Nature 2002 Oct 31;419(6910):934-9.
13. Thyroid hormone exerts site-specific effects on SRC-1 and NCoR expression selectively in the neonatal rat brain. Iannacone EA, etal., Mol Cell Endocrinol. 2002 Jan 15;186(1):49-59.
14. The nuclear receptor corepressor has organizational effects within the developing amygdala on juvenile social play and anxiety-like behavior. Jessen HM, etal., Endocrinology. 2010 Mar;151(3):1212-20. Epub 2010 Jan 5.
15. Glucocorticoid receptor (GR)-associated SMRT binding to C/EBPbeta TAD and Nrf2 Neh4/5: role of SMRT recruited to GR in GSTA2 gene repression. Ki SH, etal., Mol Cell Biol. 2005 May;25(10):4150-65.
16. Expression of nuclear hormone receptors, their coregulators and type I iodothyronine 5'-deiodinase gene in mammary tissue of nonlactating and postlactating rats. Macejova D, etal., Life Sci. 2005 Sep 30;77(20):2584-93.
17. Changes in gene expression of DOR and other thyroid hormone receptors in rat liver during acute-phase response. Malik IA, etal., Cell Tissue Res. 2010 Nov;342(2):261-72. doi: 10.1007/s00441-010-1067-4. Epub 2010 Oct 15.
18. Coactivator and corepressor gene expression in rat cerebellum during postnatal development and the effect of altered thyroid status. Martinez de Arrieta C, etal., Endocrinology. 2000 May;141(5):1693-8.
19. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
20. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
21. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
22. A molecular mechanism underlying ovarian dysfunction of polycystic ovary syndrome: hyperandrogenism induces epigenetic alterations in the granulosa cells. Qu F, etal., J Mol Med (Berl). 2012 Feb 21.
23. GOA pipeline RGD automated data pipeline
24. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
25. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
26. Comprehensive gene review and curation RGD comprehensive gene curation
27. Dynamic and combinatorial control of gene expression by nuclear retinoic acid receptors (RARs). Rochette-Egly C and Germain P, Nucl Recept Signal. 2009 May 8;7:e005.
28. Presenilin-dependent ErbB4 nuclear signaling regulates the timing of astrogenesis in the developing brain. Sardi SP, etal., Cell. 2006 Oct 6;127(1):185-97.
29. Quantification of thyroid hormone receptor isoforms, 9-cis retinoic acid receptor gamma, and nuclear receptor co-repressor by reverse-transcriptase PCR in maturing and adult skeletal muscles of rat. Schuler MJ and Pette D, Eur J Biochem. 1998 Nov 1;257(3):607-14.
30. Effects of contractile activity and hypothyroidism on nuclear hormone receptor mRNA isoforms in rat skeletal muscle. Schuler MJ, etal., Eur J Biochem 1999 Sep;264(3):982-8.
31. Glucocorticoid receptor cofactors as therapeutic targets. Simons SS Jr Curr Opin Pharmacol. 2010 Dec;10(6):613-9. Epub 2010 Aug 26.
32. Neuroanatomical distribution and colocalisation of nuclear receptor corepressor (N-CoR) and silencing mediator of retinoid and thyroid receptors (SMRT) in rat brain. van der Laan S, etal., Brain Res. 2005 Oct 19;1059(2):113-21. Epub 2005 Oct 5.
33. Functional interactions with Pit-1 reorganize co-repressor complexes in the living cell nucleus. Voss TC, etal., J Cell Sci. 2005 Aug 1;118(Pt 15):3277-88. Epub 2005 Jul 19.
34. Distinct and histone-specific modifications mediate positive versus negative transcriptional regulation of TSHalpha promoter. Wang D, etal., PLoS One. 2010 Mar 24;5(3):e9853.
35. Regulation of alpha 2(I) collagen expression in stellate cells by retinoic acid and retinoid X receptors through interactions with their cofactors. Wang L, etal., Arch Biochem Biophys. 2004 Aug 1;428(1):92-8.
36. Interactions of the mineralocorticoid receptor--within and without. Yang J and Fuller PJ, Mol Cell Endocrinol. 2012 Mar 24;350(2):196-205. doi: 10.1016/j.mce.2011.07.001. Epub 2011 Jul 18.
Additional References at PubMed
PMID:7566114   PMID:7760852   PMID:8961273   PMID:9328355   PMID:10049357   PMID:11030619   PMID:11092755   PMID:11328825   PMID:11486045   PMID:11804585   PMID:11931768   PMID:12477932  
PMID:12628926   PMID:14980219   PMID:15175761   PMID:15219413   PMID:15681609   PMID:15695367   PMID:15701601   PMID:15862975   PMID:16127449   PMID:16421255   PMID:17182846   PMID:17392792  
PMID:17505061   PMID:17606624   PMID:17928865   PMID:18052923   PMID:18063853   PMID:18326024   PMID:19037247   PMID:19052228   PMID:19299558   PMID:19946888   PMID:19955185   PMID:20388878  
PMID:20427468   PMID:20812024   PMID:21695276   PMID:23083128   PMID:24550004   PMID:24794873   PMID:26019118  


Genomics

Comparative Map Data
Ncor1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,498,852 - 47,641,612 (-)NCBIGRCr8
mRatBN7.21046,999,536 - 47,142,294 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1046,999,536 - 47,141,032 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,703,300 - 51,844,635 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,193,851 - 51,335,192 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,697,258 - 46,838,598 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01048,629,121 - 48,772,890 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1048,629,121 - 48,772,890 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,417,490 - 48,559,309 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,481,110 - 48,628,538 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11048,495,233 - 48,511,932 (-)NCBI
Celera1046,245,514 - 46,388,593 (-)NCBICelera
Cytogenetic Map10q23NCBI
NCOR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,029,157 - 16,215,534 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,029,065 - 16,218,185 (-)EnsemblGRCh38hg38GRCh38
GRCh371715,932,471 - 16,118,848 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361715,875,983 - 16,059,570 (-)NCBINCBI36Build 36hg18NCBI36
Build 341715,875,983 - 16,059,570NCBI
Celera1715,836,413 - 16,021,797 (-)NCBICelera
Cytogenetic Map17p12-p11.2NCBI
HuRef1715,800,450 - 15,985,911 (-)NCBIHuRef
CHM1_11715,943,234 - 16,128,660 (-)NCBICHM1_1
T2T-CHM13v2.01715,931,369 - 16,117,845 (-)NCBIT2T-CHM13v2.0
Ncor1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,207,132 - 62,348,200 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,207,252 - 62,349,367 (-)EnsemblGRCm39 Ensembl
GRCm381162,315,663 - 62,457,414 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,316,426 - 62,458,541 (-)EnsemblGRCm38mm10GRCm38
MGSCv371162,130,192 - 62,270,834 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,132,885 - 62,273,527 (-)NCBIMGSCv36mm8
Celera1169,235,609 - 69,376,529 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1138.08NCBI
Ncor1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554671,409,281 - 1,546,842 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554671,408,292 - 1,568,539 (-)NCBIChiLan1.0ChiLan1.0
NCOR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21956,418,767 - 56,606,360 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11761,230,404 - 61,417,984 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01734,934,452 - 35,121,195 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A110,362,694 - 110,416,423 (-)NCBIpanpan1.1PanPan1.1panPan2
NCOR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1539,687,530 - 39,837,003 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl539,687,543 - 39,836,464 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha539,833,877 - 39,983,347 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0539,797,954 - 39,946,806 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl539,797,926 - 39,946,735 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1539,769,594 - 39,919,058 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,714,886 - 39,864,318 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0539,906,752 - 40,055,598 (+)NCBIUU_Cfam_GSD_1.0
Ncor1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,273,377 - 59,429,898 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936821382,383 - 536,223 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936821382,756 - 538,254 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCOR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,273,100 - 59,392,562 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,256,868 - 59,392,564 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,387,195 - 62,538,538 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCOR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11615,442,315 - 15,629,411 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1615,462,640 - 15,628,512 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660595,330,335 - 5,517,916 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncor1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248774,233,282 - 4,377,211 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248774,203,125 - 4,379,891 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ncor1
837 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:314
Count of miRNA genes:177
Interacting mature miRNAs:213
Transcripts:ENSRNOT00000003120, ENSRNOT00000003133, ENSRNOT00000057680, ENSRNOT00000057681, ENSRNOT00000057682
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
152025229Scl83Serum cholesterol level QTL 834.33blood cholesterol amount (VT:0000180)103571058068663659Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
152025227Bw195Body weight QTL 1955.73body mass (VT:0001259)104698969968663659Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1354614Hpcl1Hepatic cholesterol level QTL 13.3liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)103539226751793994Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat

Markers in Region
D10Chm61  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21047,118,392 - 47,118,637 (+)MAPPERmRatBN7.2
Rnor_6.01048,748,821 - 48,749,065NCBIRnor6.0
Rnor_5.01048,536,829 - 48,537,073UniSTSRnor5.0
RGSC_v3.41048,605,377 - 48,605,621UniSTSRGSC3.4
Celera1046,364,148 - 46,364,392UniSTS
Cytogenetic Map10q24UniSTS
BE115478  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21047,111,749 - 47,111,927 (+)MAPPERmRatBN7.2
Rnor_6.01048,742,179 - 48,742,356NCBIRnor6.0
Rnor_5.01048,530,187 - 48,530,364UniSTSRnor5.0
RGSC_v3.41048,598,734 - 48,598,911UniSTSRGSC3.4
Celera1046,357,512 - 46,357,689UniSTS
RH 3.4 Map10547.4UniSTS
Cytogenetic Map10q24UniSTS
RH128597  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21046,999,579 - 46,999,766 (+)MAPPERmRatBN7.2
Rnor_6.01048,629,165 - 48,629,351NCBIRnor6.0
Rnor_5.01048,417,534 - 48,417,720UniSTSRnor5.0
RGSC_v3.41048,480,819 - 48,481,005UniSTSRGSC3.4
Celera1046,245,558 - 46,245,744UniSTS
RH 3.4 Map10543.8UniSTS
Cytogenetic Map10q24UniSTS
BF405607  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21047,014,549 - 47,014,695 (+)MAPPERmRatBN7.2
Rnor_6.01048,643,917 - 48,644,062NCBIRnor6.0
Rnor_5.01048,432,286 - 48,432,431UniSTSRnor5.0
RGSC_v3.41048,496,502 - 48,496,647UniSTSRGSC3.4
Celera1046,260,554 - 46,260,699UniSTS
RH 3.4 Map10544.2UniSTS
Cytogenetic Map10q24UniSTS
RH141290  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21047,000,178 - 47,000,360 (+)MAPPERmRatBN7.2
Rnor_6.01048,629,764 - 48,629,945NCBIRnor6.0
Rnor_5.01048,418,133 - 48,418,314UniSTSRnor5.0
RGSC_v3.41048,481,418 - 48,481,599UniSTSRGSC3.4
Celera1046,246,157 - 46,246,338UniSTS
RH 3.4 Map10542.7UniSTS
Cytogenetic Map10q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF059311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF124821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000081409   ⟹   ENSRNOP00000072175
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1046,999,536 - 47,141,032 (-)Ensembl
Rnor_6.0 Ensembl1048,629,121 - 48,772,890 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104484   ⟹   ENSRNOP00000077615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1046,999,536 - 47,141,032 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108770   ⟹   ENSRNOP00000094582
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1046,999,536 - 47,141,032 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112200   ⟹   ENSRNOP00000083000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1046,999,536 - 47,141,032 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113406   ⟹   ENSRNOP00000095444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1046,999,536 - 47,141,032 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117719   ⟹   ENSRNOP00000084062
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1047,086,795 - 47,141,032 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118920   ⟹   ENSRNOP00000095016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1046,999,536 - 47,141,032 (-)Ensembl
RefSeq Acc Id: NM_001271103   ⟹   NP_001258032
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,852 - 47,640,350 (-)NCBI
mRatBN7.21046,999,536 - 47,141,032 (-)NCBI
Rnor_6.01048,629,121 - 48,772,890 (-)NCBI
Rnor_5.01048,417,490 - 48,559,309 (-)NCBI
Celera1046,245,514 - 46,388,593 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039086672   ⟹   XP_038942600
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086675   ⟹   XP_038942603
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,607 (-)NCBI
mRatBN7.21046,999,547 - 47,141,289 (-)NCBI
RefSeq Acc Id: XM_039086676   ⟹   XP_038942604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,641,612 (-)NCBI
mRatBN7.21046,999,547 - 47,142,294 (-)NCBI
RefSeq Acc Id: XM_039086677   ⟹   XP_038942605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,824 (-)NCBI
mRatBN7.21046,999,547 - 47,141,502 (-)NCBI
RefSeq Acc Id: XM_039086678   ⟹   XP_038942606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086679   ⟹   XP_038942607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086680   ⟹   XP_038942608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086681   ⟹   XP_038942609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086682   ⟹   XP_038942610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086683   ⟹   XP_038942611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086684   ⟹   XP_038942612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086685   ⟹   XP_038942613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086686   ⟹   XP_038942614
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086687   ⟹   XP_038942615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086688   ⟹   XP_038942616
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086689   ⟹   XP_038942617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086690   ⟹   XP_038942618
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086691   ⟹   XP_038942619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086693   ⟹   XP_038942621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086694   ⟹   XP_038942622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086695   ⟹   XP_038942623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086696   ⟹   XP_038942624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086697   ⟹   XP_038942625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086699   ⟹   XP_038942627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086701   ⟹   XP_038942629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086704   ⟹   XP_038942632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086705   ⟹   XP_038942633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_039086706   ⟹   XP_038942634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
mRatBN7.21046,999,547 - 47,141,061 (-)NCBI
RefSeq Acc Id: XM_063269685   ⟹   XP_063125755
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269686   ⟹   XP_063125756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269687   ⟹   XP_063125757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269688   ⟹   XP_063125758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269689   ⟹   XP_063125759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,607 (-)NCBI
RefSeq Acc Id: XM_063269690   ⟹   XP_063125760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,641,612 (-)NCBI
RefSeq Acc Id: XM_063269691   ⟹   XP_063125761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,607 (-)NCBI
RefSeq Acc Id: XM_063269692   ⟹   XP_063125762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,641,612 (-)NCBI
RefSeq Acc Id: XM_063269693   ⟹   XP_063125763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,607 (-)NCBI
RefSeq Acc Id: XM_063269694   ⟹   XP_063125764
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269695   ⟹   XP_063125765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269696   ⟹   XP_063125766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269697   ⟹   XP_063125767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269698   ⟹   XP_063125768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269699   ⟹   XP_063125769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269700   ⟹   XP_063125770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269701   ⟹   XP_063125771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269702   ⟹   XP_063125772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269703   ⟹   XP_063125773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269704   ⟹   XP_063125774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269705   ⟹   XP_063125775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,498,863 - 47,640,328 (-)NCBI
RefSeq Acc Id: XM_063269706   ⟹   XP_063125776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81047,585,942 - 47,640,328 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001258032 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942600 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942603 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942604 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942605 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942606 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942607 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942608 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942609 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942610 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942611 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942612 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942613 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942614 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942615 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942616 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942617 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942618 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942619 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942621 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942622 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942623 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942624 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942625 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942627 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942629 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942632 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942633 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942634 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125755 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125756 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125757 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125758 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125759 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125760 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125761 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125762 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125763 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125764 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125765 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125766 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125767 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125768 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125769 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125770 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125771 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125772 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125773 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125774 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125775 (Get FASTA)   NCBI Sequence Viewer  
  XP_063125776 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC14567 (Get FASTA)   NCBI Sequence Viewer  
  AAD32566 (Get FASTA)   NCBI Sequence Viewer  
  EDM04703 (Get FASTA)   NCBI Sequence Viewer  
  EDM04704 (Get FASTA)   NCBI Sequence Viewer  
  EDM04705 (Get FASTA)   NCBI Sequence Viewer  
  EDM04706 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000072175.1
  ENSRNOP00000077615.1
  ENSRNOP00000083000.1
  ENSRNOP00000084062.1
  ENSRNOP00000094582.1
  ENSRNOP00000095016.1
  ENSRNOP00000095444.1
GenBank Protein Q9WUB5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001258032   ⟸   NM_001271103
- UniProtKB: A0A0G2K2B4 (UniProtKB/TrEMBL),   A0A8I5ZV51 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072175   ⟸   ENSRNOT00000081409
RefSeq Acc Id: XP_038942604   ⟸   XM_039086676
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942605   ⟸   XM_039086677
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942603   ⟸   XM_039086675
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942632   ⟸   XM_039086704
- Peptide Label: isoform X40
- UniProtKB: A6HFA1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942627   ⟸   XM_039086699
- Peptide Label: isoform X34
- UniProtKB: A6HFA1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942634   ⟸   XM_039086706
- Peptide Label: isoform X42
- UniProtKB: A6HFA1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942633   ⟸   XM_039086705
- Peptide Label: isoform X41
- UniProtKB: A0A8I6APG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942619   ⟸   XM_039086691
- Peptide Label: isoform X19
- UniProtKB: A0A8I5Y9M5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942616   ⟸   XM_039086688
- Peptide Label: isoform X16
- UniProtKB: A0A8I5Y9M5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942615   ⟸   XM_039086687
- Peptide Label: isoform X15
- UniProtKB: A0A8I5Y9M5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942617   ⟸   XM_039086689
- Peptide Label: isoform X17
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942614   ⟸   XM_039086686
- Peptide Label: isoform X14
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942613   ⟸   XM_039086685
- Peptide Label: isoform X13
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942606   ⟸   XM_039086678
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942625   ⟸   XM_039086697
- Peptide Label: isoform X29
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942621   ⟸   XM_039086693
- Peptide Label: isoform X20
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942612   ⟸   XM_039086684
- Peptide Label: isoform X10
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942623   ⟸   XM_039086695
- Peptide Label: isoform X24
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942618   ⟸   XM_039086690
- Peptide Label: isoform X18
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942624   ⟸   XM_039086696
- Peptide Label: isoform X26
- UniProtKB: A0A8I6APG3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942622   ⟸   XM_039086694
- Peptide Label: isoform X22
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942611   ⟸   XM_039086683
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942607   ⟸   XM_039086679
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942610   ⟸   XM_039086682
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942629   ⟸   XM_039086701
- Peptide Label: isoform X35
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942608   ⟸   XM_039086680
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942609   ⟸   XM_039086681
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942600   ⟸   XM_039086672
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AMG4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000095444   ⟸   ENSRNOT00000113406
Ensembl Acc Id: ENSRNOP00000077615   ⟸   ENSRNOT00000104484
Ensembl Acc Id: ENSRNOP00000095016   ⟸   ENSRNOT00000118920
Ensembl Acc Id: ENSRNOP00000094582   ⟸   ENSRNOT00000108770
Ensembl Acc Id: ENSRNOP00000084062   ⟸   ENSRNOT00000117719
Ensembl Acc Id: ENSRNOP00000083000   ⟸   ENSRNOT00000112200
RefSeq Acc Id: XP_063125762   ⟸   XM_063269692
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063125760   ⟸   XM_063269690
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063125763   ⟸   XM_063269693
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063125761   ⟸   XM_063269691
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063125759   ⟸   XM_063269689
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063125771   ⟸   XM_063269701
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063125769   ⟸   XM_063269699
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063125764   ⟸   XM_063269694
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063125765   ⟸   XM_063269695
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063125758   ⟸   XM_063269688
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063125766   ⟸   XM_063269696
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063125767   ⟸   XM_063269697
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063125772   ⟸   XM_063269702
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063125770   ⟸   XM_063269700
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063125768   ⟸   XM_063269698
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063125775   ⟸   XM_063269705
- Peptide Label: isoform X38
RefSeq Acc Id: XP_063125774   ⟸   XM_063269704
- Peptide Label: isoform X37
RefSeq Acc Id: XP_063125773   ⟸   XM_063269703
- Peptide Label: isoform X36
RefSeq Acc Id: XP_063125756   ⟸   XM_063269686
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063125757   ⟸   XM_063269687
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063125755   ⟸   XM_063269685
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063125776   ⟸   XM_063269706
- Peptide Label: isoform X39
- UniProtKB: A0A8I5ZYC0 (UniProtKB/TrEMBL)
Protein Domains
HTH myb-type   Myb-like   N-CoR GPS2-interacting   SANT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WUB5-F1-model_v2 AlphaFold Q9WUB5 1-533 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697272
Promoter ID:EPDNEW_R7797
Type:multiple initiation site
Name:Ncor1_1
Description:nuclear receptor co-repressor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01048,772,886 - 48,772,946EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3612 AgrOrtholog
BioCyc Gene G2FUF-24776 BioCyc
Ensembl Genes ENSRNOG00000055246 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000081409.2 UniProtKB/TrEMBL
  ENSRNOT00000104484.1 UniProtKB/TrEMBL
  ENSRNOT00000108770.1 UniProtKB/TrEMBL
  ENSRNOT00000112200.1 UniProtKB/TrEMBL
  ENSRNOT00000113406.1 UniProtKB/TrEMBL
  ENSRNOT00000117719.1 UniProtKB/TrEMBL
  ENSRNOT00000118920.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.430 UniProtKB/TrEMBL
  1.20.58.1880 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7381908 IMAGE-MGC_LOAD
InterPro Homeodomain-like UniProtKB/TrEMBL
  Myb_dom UniProtKB/TrEMBL
  N-CoR_corepressor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  N-CoR_GPS2_interact UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
KEGG Report rno:54299 UniProtKB/TrEMBL
MGC_CLONE MGC:116328 IMAGE-MGC_LOAD
NCBI Gene Ncor1 ENTREZGENE
PANTHER NUCLEAR RECEPTOR CO-REPRESSOR RELATED NCOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEAR RECEPTOR COREPRESSOR 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GPS2_interact UniProtKB/TrEMBL
  Myb_DNA-binding UniProtKB/TrEMBL
PhenoGen Ncor1 PhenoGen
PROSITE HTH_MYB UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000055246 RatGTEx
SMART SANT UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
UniProt A0A0G2K2B4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y9M5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZV51 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZYC0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALG2_RAT UniProtKB/TrEMBL
  A0A8I6AMG4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6APG3 ENTREZGENE, UniProtKB/TrEMBL
  A6HF98_RAT UniProtKB/TrEMBL
  A6HFA1 ENTREZGENE, UniProtKB/TrEMBL
  NCOR1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary O70463 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2001-06-26 Ncor1  nuclear receptor co-repressor 1      Symbol and Name updated to reflect Human and Mouse nomenclature 67952 APPROVED
2001-06-26 Rxrip13  N-Cor/SMRT corepressor, Rip13      Symbol and Name withdrawn 67952 WITHDRAWN

RGD Curation Notes
Note Type Note Reference
gene_function co-repressor for many transcription factors including CBF1  
gene_process co-repressor for many transcription factors including CBF1 625728
gene_process mediates differentiation of neural stem cells into astrocytes 625728
gene_regulation phosphorylation status correlates with its subcellular localization 625728
gene_regulation activity is regulated by Akt1 and PP-1 625728
gene_transcript contains a consensus interaction site for protein phosphatase-1 (PP-1), RVKF 625728