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Gene: Pygb (glycogen phosphorylase B) Rattus norvegicus

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Symbol:

Pygb

Name:

glycogen phosphorylase B

RGD ID:

3460

Description:

Enables carbohydrate binding activity; glycogen phosphorylase activity; and identical protein binding activity. Involved in glycogen catabolic process. Located in axon. Orthologous to human PYGB (glycogen phosphorylase B); PARTICIPATES IN glycogen degradation pathway; insulin signaling pathway; starch and sucrose metabolic pathway; INTERACTS WITH 2,5-hexanedione; 3-chloropropane-1,2-diol; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

brain; brain glycogen phosphorylase; glycogen phosphorylase, brain form; GLYPHOA; phosphorylase, glycogen; phosphorylase, glycogen; brain

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PYGB (glycogen phosphorylase B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Pygb (brain glycogen phosphorylase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pygb (glycogen phosphorylase B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PYGB (glycogen phosphorylase B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PYGB (glycogen phosphorylase B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pygb (glycogen phosphorylase B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PYGB (glycogen phosphorylase B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LOC103247035 (glycogen phosphorylase B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pygb (glycogen phosphorylase B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PYGM (glycogen phosphorylase, muscle associated)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	PYGB (glycogen phosphorylase B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pygb (brain glycogen phosphorylase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pygb (phosphorylase, glycogen; brain)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	GPH1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	GPH1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	GlyP	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pygl-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pygm	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pygm	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	160,072,141 - 160,118,930 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	160,072,115 - 160,123,961 (+)	Ensembl				GRCr8
mRatBN7.2	3	139,611,724 - 139,658,521 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	139,611,749 - 139,663,553 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	143,507,801 - 143,554,693 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	152,091,537 - 152,138,438 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	149,840,091 - 149,886,995 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	146,581,063 - 146,629,504 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	146,582,752 - 146,634,535 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	152,941,739 - 152,988,417 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	141,421,421 - 141,468,094 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	138,373,554 - 138,420,266 (+)	NCBI		Celera
RGSC_v3.1	3	141,327,094 - 141,373,658 (+)	NCBI
RH 3.4 Map	3	1196.32	RGD
Cytogenetic Map	3	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenoid cystic carcinoma (ISO)

Dwarfism (ISO)

Myocardial Ischemia (ISO)

Salivary Gland Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,5-hexanedione (EXP)

2,6-dimethoxyphenol (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

actinomycin D (ISO)

Aflatoxin B2 alpha (ISO)

alvocidib (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

baicalein (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

cadmium dichloride (EXP)

calcidiol (EXP)

cantharidin (ISO)

capecitabine (ISO)

CGP 52608 (ISO)

choline (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dextran sulfate (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dichlorvos (EXP)

diethyldithiocarbamic acid (EXP)

dioxygen (ISO)

diuron (EXP)

doxifluridine (ISO)

doxorubicin (EXP,ISO)

elemental selenium (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

furan (EXP)

furfural (ISO)

genistein (ISO)

hydroquinone (ISO)

inulin (ISO)

ivermectin (ISO)

L-methionine (ISO)

lanthanum trichloride (EXP)

lead diacetate (EXP)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (ISO)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

nitrates (ISO)

Nutlin-3 (ISO)

okadaic acid (ISO)

paracetamol (EXP)

PCB138 (EXP)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

plumbagin (EXP)

quercetin (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenite (EXP,ISO)

sodium chloride (ISO)

sodium nitrate (ISO)

Soman (EXP)

sotorasib (ISO)

sulforaphane (ISO)

temozolomide (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

toxaphene (EXP)

trametinib (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

glycogen catabolic process (IBA,IDA,IEA,ISO)

glycogen metabolic process (IDA,IEA)

Cellular Component

axon (IDA)

cytoplasm (IBA,IEA,ISO)

Molecular Function

1,4-alpha-oligoglucan phosphorylase activity (IEA)

carbohydrate binding (IDA,IEA)

catalytic activity (IEA)

glycogen phosphorylase activity (IBA,IDA,IEA,ISO,TAS)

glycosyltransferase activity (IEA)

identical protein binding (IPI)

protein binding (ISO)

pyridoxal phosphate binding (IBA,IEA)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

glycogen degradation pathway (ISO)

insulin signaling pathway (IEA)

starch and sucrose metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Development of potent, orally active 1-substituted-3,4-dihydro-2-quinolone glycogen phosphorylase inhibitors.	Birch AM, etal., Bioorg Med Chem Lett. 2007 Jan 15;17(2):394-9. Epub 2006 Oct 19.
2.	Structural relationships among regulated and unregulated phosphorylases.	Buchbinder JL, etal., Annu Rev Biophys Biomol Struct. 2001;30:191-209.
3.	Studies on the expression and evolution of the glycogen phosphorylase gene family in the rat.	Crerar MM, etal., Genome 1988 Aug;30(4):582-90.
4.	Idazoxan activates rat forebrain glycogen phosphorylase in vivo: a histochemical study.	Fara-On M, etal., Brain Res. 2005 Oct 12;1059(1):83-92. Epub 2005 Oct 13.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
7.	Comparative analysis of species-independent, isozyme-specific amino-acid substitutions in mammalian muscle, brain and liver glycogen phosphorylases.	Hudson JW, etal., Biochim Biophys Acta 1993 Jul 10;1164(2):197-208.
8.	Glycogen phosphorylase: control by phosphorylation and allosteric effectors.	Johnson LN FASEB J. 1992 Mar;6(6):2274-82.
9.	Histochemical mapping of the substrate for brain-stimulation reward with glycogen phosphorylase.	Konkle AT, etal., J Neurosci Methods. 1999 Nov 15;93(2):111-9.
10.	High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
11.	Glycogen synthesis in the astrocyte: from glycogenin to proglycogen to glycogen.	Lomako J, etal., FASEB J. 1993 Nov;7(14):1386-93.
12.	Glycogen phosphorylase isoenzymes from hepatoma 3924A and from a non-tumorigenic liver cell line. Comparison with the liver and brain enzymes.	Mayer D, etal., Biochem J. 1992 Mar 15;282 ( Pt 3):665-73.
13.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
14.	Glycogen phosphorylase isozymes and energy metabolism in the rat peripheral nervous system--an immunocytochemical study.	Pfeiffer-Guglielmi B, etal., Brain Res. 2007 Mar 9;1136(1):20-7. Epub 2006 Dec 20.
15.	Isozyme pattern of glycogen phosphorylase in the rat nervous system and rat astroglia-rich primary cultures: electrophoretic and polymerase chain reaction studies.	Pfeiffer-Guglielmi B, etal., Neurochem Res. 2000 Nov;25(11):1485-91.
16.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
17.	GOA pipeline	RGD automated data pipeline
18.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10638593	PMID:12477932	PMID:16229987	PMID:16879805	PMID:17442042	PMID:19292454	PMID:19946888	PMID:21700703	PMID:22206666	PMID:22871113	PMID:23533145
PMID:25931508	PMID:26316108	PMID:29476059	PMID:32357304

Genomics

Comparative Map Data

Pygb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	160,072,141 - 160,118,930 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	160,072,115 - 160,123,961 (+)	Ensembl				GRCr8
mRatBN7.2	3	139,611,724 - 139,658,521 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	139,611,749 - 139,663,553 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	143,507,801 - 143,554,693 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	152,091,537 - 152,138,438 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	149,840,091 - 149,886,995 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	146,581,063 - 146,629,504 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	146,582,752 - 146,634,535 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	152,941,739 - 152,988,417 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	141,421,421 - 141,468,094 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	138,373,554 - 138,420,266 (+)	NCBI		Celera
RGSC_v3.1	3	141,327,094 - 141,373,658 (+)	NCBI
RH 3.4 Map	3	1196.32	RGD
Cytogenetic Map	3	q41	NCBI

PYGB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	25,248,085 - 25,298,012 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	25,248,085 - 25,298,012 (+)	Ensembl			hg38	GRCh38
GRCh37	20	25,228,721 - 25,278,648 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	25,176,706 - 25,226,648 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	25,176,705 - 25,226,648	NCBI
Celera	20	25,302,440 - 25,352,386 (+)	NCBI		Celera
Cytogenetic Map	20	p11.21	NCBI
HuRef	20	25,186,079 - 25,235,994 (+)	NCBI		HuRef
CHM1_1	20	25,229,585 - 25,279,528 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	25,313,131 - 25,363,101 (+)	NCBI		T2T-CHM13v2.0

Pygb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	150,628,716 - 150,673,668 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	150,628,655 - 150,673,678 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	150,786,796 - 150,831,748 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	150,786,735 - 150,831,758 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	150,612,532 - 150,657,484 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	150,478,237 - 150,523,189 (+)	NCBI		MGSCv36	mm8
Celera	2	152,019,819 - 152,065,130 (+)	NCBI		Celera
Cytogenetic Map	2	G3	NCBI
cM Map	2	74.74	NCBI

Pygb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	31,254,204 - 31,283,651 (+)	Ensembl
ChiLan1.0	NW_004955415	31,254,240 - 31,283,651 (+)	NCBI	ChiLan1.0	ChiLan1.0

PYGB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	26,121,781 - 26,173,790 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	26,118,634 - 26,170,623 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	25,191,066 - 25,242,955 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	25,607,895 - 25,648,066 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	25,593,589 - 25,648,066 (+)	Ensembl			panPan2	panpan1.1

PYGB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	1,440,826 - 1,494,570 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	1,420,052 - 1,496,245 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	1,470,378 - 1,524,112 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	1,681,167 - 1,734,965 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	1,681,075 - 1,735,315 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	1,521,968 - 1,575,698 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	1,646,573 - 1,700,313 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	1,613,910 - 1,667,799 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pygb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	147,113,119 - 147,155,398 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936620	532,634 - 575,916 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936620	533,574 - 575,893 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PYGB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	30,940,452 - 30,995,691 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	30,940,457 - 30,995,688 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LOC103247035
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666078	7,750,872 - 7,807,853 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pygb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624939	270,652 - 302,608 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624939	273,448 - 302,604 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Pygb
282 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	297
Count of miRNA genes:	206
Interacting mature miRNAs:	244
Transcripts:	ENSRNOT00000010157
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	120538241	165538241	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1300173	Rf11	Renal function QTL 11	3.38		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	121056165	145956249	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	127162703	168026850	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	121056165	157309487	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	130193298	161695983	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat

Markers in Region

RH127518

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	139,658,253 - 139,658,442 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	146,629,237 - 146,629,425	NCBI	Rnor6.0
Rnor_5.0	3	152,988,150 - 152,988,338	UniSTS	Rnor5.0
RGSC_v3.4	3	141,467,827 - 141,468,015	UniSTS	RGSC3.4
Celera	3	138,419,999 - 138,420,187	UniSTS
RH 3.4 Map	3	1192.91	UniSTS
Cytogenetic Map	3	q41	UniSTS

RH94711

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	139,657,832 - 139,657,942 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	146,628,816 - 146,628,925	NCBI	Rnor6.0
Rnor_5.0	3	152,987,729 - 152,987,838	UniSTS	Rnor5.0
RGSC_v3.4	3	141,467,406 - 141,467,515	UniSTS	RGSC3.4
Celera	3	138,419,578 - 138,419,687	UniSTS
RH 3.4 Map	3	1196.32	UniSTS
Cytogenetic Map	3	q41	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_013188	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AW535913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CA504871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB720204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK357665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO400919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L10668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M27726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010157 ⟹ ENSRNOP00000010158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	160,072,185 - 160,123,961 (+)	Ensembl
mRatBN7.2 Ensembl	3	139,611,768 - 139,663,552 (+)	Ensembl
Rnor_6.0 Ensembl	3	146,582,752 - 146,634,535 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100727 ⟹ ENSRNOP00000084107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	160,072,151 - 160,118,927 (+)	Ensembl
mRatBN7.2 Ensembl	3	139,611,760 - 139,658,175 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111537 ⟹ ENSRNOP00000093697

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	160,072,115 - 160,122,420 (+)	Ensembl
mRatBN7.2 Ensembl	3	139,611,749 - 139,663,553 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000151221 ⟹ ENSRNOP00000107540

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	160,072,115 - 160,117,588 (+)	Ensembl

RefSeq Acc Id:

NM_013188 ⟹ NP_037320

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	160,072,141 - 160,118,930 (+)	NCBI
mRatBN7.2	3	139,611,724 - 139,658,521 (+)	NCBI
Rnor_6.0	3	146,582,708 - 146,629,504 (+)	NCBI
Rnor_5.0	3	152,941,739 - 152,988,417 (+)	NCBI
RGSC_v3.4	3	141,421,421 - 141,468,094 (+)	RGD
Celera	3	138,373,554 - 138,420,266 (+)	RGD

Sequence:

show sequence

GCCGGCCTCTGCCGCAGTCCTTGGCGCCAGAGACGCTGCAGCATCTCAGCACTAGAGGCTTCTC
TGCTCGCTCCTGGTCCATCCTTCGTCCTCTACCTCATCTGGCGCCATGGCGAAGCCATTGACGG
ACAGTGAGAGGCAGAAGCAGATCAGTGTGCGTGGCATCGCCGGGCTAGGCGACGTGGCCGAGGT
GCGGAAGAGCTTCAACAGGCACCTGCACTTCACGCTGGTCAAGGACCGCAATGTGGCCACTCCC
CGCGACTACTTCTTCGCTCTGGCACACACGGTTCGCGACCACCTAGTGGGCCGCTGGATCCGCA
CGCAACAGCATTACTACGAACGGGACCCCAAGCGTATCTACTACCTTTCCCTGGAATTCTACAT
GGGCCGCACACTGCAGAACACCATGGTGAACCTGGGCCTTCAGACTGCATGTGATGAAGCCACT
TATCAGTTGGGGTTGGACTTGGAAGAACTAGAGGAAATAGAGGAGGATGCTGGCCTTGGGAATG
GTGGCCTGGGGCGGCTGGCAGCTTGCTTCCTTGATTCGATGGCCACGCTGGGTCTAGCTGCATA
TGGCTATGGAATCCGCTATGAATTTGGGATTTTCAACCAAAAGATTGTCAATGGCTGGCAGGTT
GAAGAAGCTGACGACTGGCTGCGCTACGGAAACCCATGGGAGAAGGCGCGGCCGGAGTACATGC
TGCCTGTGCACTTCTACGGGAGGGTGGAGCACACCCCTAACGGTGTCCTCTGGCTGGACACACA
GGTGGTACTCGCCATGCCCTATGACACCCCAGTGCCTGGGTATAAGAACAACACCGTCAACACC
ATGAGGCTCTGGTCTGCCAAGGCACCCAATGACTTCAAGCTGAAGGACTTCAACGTTGGGGACT
ACATCGAAGCTGTCCTGGACAGGAACTTGGCCGAGAACATCTCCAGGGTCCTGTATCCCAATGA
CAATTTCTTCGAGGGAAAGGAGCTGCGGCTGAAGCAGGAGTACTTTGTGGTGGCCGCCACCCTC
CAGGACATCATTAGAAGGTTCAAGTCGTCCAAGTTTGGCTGCCGGGATCCAGTGAGAACCTGTT
TCGAGACATTCCCAGACAAGGTAGCCATCCAGCTGAATGACACCCATCCCGCGCTGTCCATCCC
CGAGCTCATGCGGATCCTGGTGGACGTGGAGAAGGTAGACTGGGATAAGGCCTGGGAGATCACC
AAGAAGACCTGTGCCTACACCAACCACACTGTGCTGCCCGAGGCCTTGGAGCGCTGGCCCGTGT
CTATGTTTGAGAAGCTGCTGCCGCGACACCTGGAAATCATCTATGCCATCAACCAGAGGCACCT
GGATCACGTGGCTGCCCTGTTTCCCGGGGATGTGGACCGCTTGAGGAGGATGTCTGTGATTGAG
GAAGGGGACTGCAAGAGAATCAACATGGCACACCTGTGTGTGATTGGGTCCCACGCCGTGAACG
GGGTGGCAAGGATTCACTCCGAGATCGTGAAGCAGTCTGTCTTCAAGGACTTTTATGAGCTGGA
GCCAGAGAAGTTCCAGAACAAGACCAATGGTATCACGCCCCGACGGTGGCTGCTCTTGTGCAAT
CCGGGGCTGGCAGAAATCATTGTGGAGAGAATCGGGGAAGGTTTCCTGACTGATCTGAGCCAAC
TGAAGAAGCTGCTGTCACTGGTTGATGATGAGGCCTTCATCAGGGATGTAGCCAAGGTCAAGCA
GGAAAACAAGCTGAAGTTCTCTGCCCAGCTAGAGAAGGAATACAAGGTGAAGATCAACCCTGCG
TCCATGTTTGATGTGCACGTCAAGAGGATCCACGAGTACAAGCGGCAGCTGCTCAACTGCTTAC
ACATCATCACCCTGTACAACCGAATAAAGAAGGATCCAACCAAGACCTTTGTGCCCAGGACTGT
TATGATCGGAGGCAAGGCAGCTCCTGGTTACCACATGGCTAAGATGATCATCAAGCTGGTCACA
TCCATTGGAGATGTTGTCAATCATGATCCAGTTGTGGGCGACAGGCTCAGAGTGATCTTCCTGG
AGAACTACCGTGTGTCTTTAGCTGAGAAAGTGATCCCAGCCGCCGACCTGTCACAGCAGATCTC
CACTGCGGGCACCGAGGCCTCGGGCACCGGCAACATGAAGTTCATGCTCAACGGAGCTCTCACC
ATCGGCACCATGGATGGTGCCAACGTGGAGATGGCCGAGGAGGCCGGGGAGGAGAACCTCTTCA
TCTTTGGTATGCGGGTGGAAGATGTTGAGGCCTTGGACCAGAAAGGGTACAATGCCAGAGAATT
CTACGAGCGCCTGCCTGAGCTGAGGCAGGCTGTGGATCAGATCAGCAGTGGCTTCTTTTCTCCC
AAAGATCCAGACTGCTTCAAGGATGTGGTTAACATGCTGATGTACCATGACAGATTCAAGGTAT
TTGCAGACTATGAAGCCTACATCCAATGCCAGGCCCAGGTGGACCATCTATACCGGAATCCCAA
GGATTGGACTAAAAAGGTGATCAGAAATATAGCCTGCTCTGGCAAATTCTCCAGTGACCGGACC
ATCACTGAGTATGCCCGGGAGATCTGGGGTGTAGAGCCCTCTGACCTGCAGATCCCACCCCCTA
ATCTCCCCAAGGACTAATTCTTCCACACAGTGAGACCAGTGGCTTGTGTGGCTGACTGTGCCCC
ATACAAGGCACTGCAAGCAGCTGGTCCCAGCTATCCCAAGTGCTATGTTTCCGGGAAGGACCAT
GGGAATGGTTTTGAGGACCTGGATAAGGAAGAAGTATGTGGCATCCTCTTGGTTTCTTACAGAA
GAACTCTTTCAGAGTTCATAGCACAGATGGGCAGAGATGGTCCCCACAGCTTCAACCCATCATC
ATCCCCAGAGGATGAGGAGGGAGGAGGTGGAGCTGAGCCCCCAGAATCCTCCACATAACTGAGT
GAACTTAAGCCTTTAGTTTTGGGGGTCTGAATAGGGATCTGTGATGGAGCCAGTATTCCTATGT
GTTCTGCTAATACCCGGGTCACTAGCTGTAGGTTAGAGCCAACCCCAGTGTGTGGTCTTGTTGG
CCTGCTGGGTAGAGCCTTTTCTTCAGGTTTCATGCTCACAGTTTTTCCTTTACCCTTGGCTGAA
TTGAGTATCTGGGTGGTTGATCCATATGGGGCCATGCCTCTGTAGCCACCTGTAGAACCCTGTG
GGTGTCATGCAGAACCCAGAACCCTGAAGAGGAGAATAAAGAGAGACCTCTATCCCATATTTGA
GGCCTTGGTTAAGGACTGGCAATTTTATAGACGGTTGGCTTAGTCCTTTGCTTTTTCAACAGGA
AATAACACTTCATGAGGAATTGAAACTAGCTAAAGCCTTCCTTTTTTGCAAGTAAACCTTGTAC
TTGGTCAGTCTGGATATTTCTGCCCTGGCTGACTCAGCTGCTAGTCCTGCAGTAGGGCCTGGTT
CCCACTCTGCTACAGCAGCATAGTGAGAAAGAGCGGTTAAGCCCACCCACTACAGGAGCCATGC
TCCTCCCTGAGGGCAGAGTAGGGTTGTCAGAGAACTACATAAAACTCCTTCCAGAGATTCACCA
CCTTGCATTGCTGTATCTGGTTCGGGATGGGCAGGAAAACGCCTCACTTTCCTCAACCCTGGCA
GTGTTTACTGGGAAGTGTCTGTTTTCAGCACTCAATTCACCGGAACCACTGTGGTAGCTTTGGG
GGTGGGTGGGCAGGTTCTGGGGCTGGTCATCTGCTGCCCTGTGCATGAGGTCCCTTGAAGCCAT
AATACATGATCACCCCTCTACTATTTACTGTTACCTCCTTGTAAGAGAAATGGATTAAACTTCT
ATACCCATGGTTGGCCAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_037320	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA40815	(Get FASTA)	NCBI Sequence Viewer
	AAA41252	(Get FASTA)	NCBI Sequence Viewer
	AAI66475	(Get FASTA)	NCBI Sequence Viewer
	EDL86138	(Get FASTA)	NCBI Sequence Viewer
	EDL86139	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000084107
GenBank Protein	P53534	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_037320 ⟸ NM_013188

- UniProtKB:

P53534 (UniProtKB/Swiss-Prot), A6KHG6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAKPLTDSERQKQISVRGIAGLGDVAEVRKSFNRHLHFTLVKDRNVATPRDYFFALAHTVRDHL
VGRWIRTQQHYYERDPKRIYYLSLEFYMGRTLQNTMVNLGLQTACDEATYQLGLDLEELEEIEE
DAGLGNGGLGRLAACFLDSMATLGLAAYGYGIRYEFGIFNQKIVNGWQVEEADDWLRYGNPWEK
ARPEYMLPVHFYGRVEHTPNGVLWLDTQVVLAMPYDTPVPGYKNNTVNTMRLWSAKAPNDFKLK
DFNVGDYIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCR
DPVRTCFETFPDKVAIQLNDTHPALSIPELMRILVDVEKVDWDKAWEITKKTCAYTNHTVLPEA
LERWPVSMFEKLLPRHLEIIYAINQRHLDHVAALFPGDVDRLRRMSVIEEGDCKRINMAHLCVI
GSHAVNGVARIHSEIVKQSVFKDFYELEPEKFQNKTNGITPRRWLLLCNPGLAEIIVERIGEGF
LTDLSQLKKLLSLVDDEAFIRDVAKVKQENKLKFSAQLEKEYKVKINPASMFDVHVKRIHEYKR
QLLNCLHIITLYNRIKKDPTKTFVPRTVMIGGKAAPGYHMAKMIIKLVTSIGDVVNHDPVVGDR
LRVIFLENYRVSLAEKVIPAADLSQQISTAGTEASGTGNMKFMLNGALTIGTMDGANVEMAEEA
GEENLFIFGMRVEDVEALDQKGYNAREFYERLPELRQAVDQISSGFFSPKDPDCFKDVVNMLMY
HDRFKVFADYEAYIQCQAQVDHLYRNPKDWTKKVIRNIACSGKFSSDRTITEYAREIWGVEPSD
LQIPPPNLPKD

hide sequence

Ensembl Acc Id:

ENSRNOP00000010158 ⟸ ENSRNOT00000010157

Ensembl Acc Id:

ENSRNOP00000084107 ⟸ ENSRNOT00000100727

Ensembl Acc Id:

ENSRNOP00000093697 ⟸ ENSRNOT00000111537

Ensembl Acc Id:

ENSRNOP00000107540 ⟸ ENSRNOT00000151221

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P53534-F1-model_v2	AlphaFold	P53534	1-838	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692518

Promoter ID:

EPDNEW_R3043

Type:

initiation region

Name:

Pygb_1

Description:

glycogen phosphorylase B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	146,582,733 - 146,582,793	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3460	AgrOrtholog
BioCyc Gene	G2FUF-47337	BioCyc
BioCyc Pathway	PWY-5941 [glycogen degradation II]	BioCyc
BioCyc Pathway Image	PWY-5941	BioCyc
Ensembl Genes	ENSRNOG00000007583	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000100727	ENTREZGENE
Gene3D-CATH	Glycogen Phosphorylase B	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:9100353	IMAGE-MGC_LOAD
InterPro	Glycg_phsphrylas	UniProtKB/Swiss-Prot
	Glyco_trans_35	UniProtKB/Swiss-Prot
	Pyridoxal_P_attach_site	UniProtKB/Swiss-Prot
KEGG Report	rno:25739	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:187917	IMAGE-MGC_LOAD
NCBI Gene	25739	ENTREZGENE
PANTHER	GLYCOGEN PHOSPHORYLASE, BRAIN FORM	UniProtKB/Swiss-Prot
	PTHR11468	UniProtKB/Swiss-Prot
Pfam	Phosphorylase	UniProtKB/Swiss-Prot
PhenoGen	Pygb	PhenoGen
PIRSF	Pprylas_GlgP	UniProtKB/Swiss-Prot
PROSITE	PHOSPHORYLASE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000007583	RatGTEx
Superfamily-SCOP	UDP-Glycosyltransferase/glycogen phosphorylase	UniProtKB/Swiss-Prot
UniProt	A0A8I6G9W3_RAT	UniProtKB/TrEMBL
	A0A8I6GKE5_RAT	UniProtKB/TrEMBL
	A6KHG6	ENTREZGENE, UniProtKB/TrEMBL
	A6KHG7_RAT	UniProtKB/TrEMBL
	G3V6Y6_RAT	UniProtKB/TrEMBL
	P53534	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-11-18	Pygb	glycogen phosphorylase B	Pygb	phosphorylase, glycogen; brain	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-11-11	Pygb	phosphorylase, glycogen; brain	Pygb	brain glycogen phosphorylase	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Pygb	Brain glycogen phosphorylase			Symbol and Name status set to approved	70586	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)

BioCyc Pathways