AMELX (amelogenin X-linked) - Rat Genome Database

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Gene: AMELX (amelogenin X-linked) Pan paniscus
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Symbol: AMELX
Name: amelogenin X-linked
RGD ID: 329347270
Description: ENCODES a protein that exhibits structural constituent of tooth enamel (inferred); INVOLVED IN biomineral tissue development (inferred); enamel mineralization (inferred); tooth mineralization (inferred); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 1E (ortholog); amenorrhea (ortholog); FOUND IN collagen-containing extracellular matrix (inferred); extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: amelogenin, X isoform
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X13,095,274 - 13,102,680 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X13,098,940 - 13,106,346 (+)NCBINHGRI_mPanPan1
PanPan1.1 EnsemblX11,214,103 - 11,221,443 (+)Ensemblpanpan1.1panPan2


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
AMELX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X13,095,274 - 13,102,680 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X13,098,940 - 13,106,346 (+)NCBINHGRI_mPanPan1
PanPan1.1 EnsemblX11,214,103 - 11,221,443 (+)Ensemblpanpan1.1panPan2
AMELX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X11,293,413 - 11,309,588 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX11,293,413 - 11,300,761 (+)EnsemblGRCh38hg38GRCh38
GRCh37X11,311,533 - 11,318,881 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X11,221,454 - 11,228,802 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX15,438,990 - 15,446,338 (+)NCBICelera
Cytogenetic MapXp22.2NCBI
HuRefX9,091,155 - 9,098,355 (+)NCBIHuRef
CHM1_1X11,342,001 - 11,349,349 (+)NCBICHM1_1
T2T-CHM13v2.0X10,875,912 - 10,892,087 (+)NCBIT2T-CHM13v2.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000032117   ⟹   ENSPPAP00000009474
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX11,214,103 - 11,221,443 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000032119   ⟹   ENSPPAP00000009476
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX11,214,103 - 11,221,443 (+)Ensembl
Ensembl Acc Id: ENSPPAT00000032120   ⟹   ENSPPAP00000009477
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 EnsemblX11,214,103 - 11,221,443 (+)Ensembl
RefSeq Acc Id: XM_055106119   ⟹   XP_054962094
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X13,095,274 - 13,102,680 (+)NCBI
NHGRI_mPanPan1X13,098,940 - 13,106,346 (+)NCBI
RefSeq Acc Id: XM_063601881   ⟹   XP_063457951
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X13,095,274 - 13,102,680 (+)NCBI
Protein Sequences
Protein RefSeqs XP_054962094 (Get FASTA)   NCBI Sequence Viewer  
  XP_063457951 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000009474.1
  ENSPPAP00000009476.1
  ENSPPAP00000009477.1
RefSeq Acc Id: XP_054962094   ⟸   XM_055106119
- Peptide Label: isoform X2
- UniProtKB: A0A2R8ZWX2 (UniProtKB/TrEMBL),   A0A2R8ZY20 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000009476   ⟸   ENSPPAT00000032119
Ensembl Acc Id: ENSPPAP00000009474   ⟸   ENSPPAT00000032117
Ensembl Acc Id: ENSPPAP00000009477   ⟸   ENSPPAT00000032120
RefSeq Acc Id: XP_063457951   ⟸   XM_063601881
- Peptide Label: isoform X1
- UniProtKB: A0A2R9A2H0 (UniProtKB/TrEMBL),   A0A2R8ZY20 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027973 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000032117.1 UniProtKB/TrEMBL
  ENSPPAT00000032119.1 UniProtKB/TrEMBL
  ENSPPAT00000032120.1 UniProtKB/TrEMBL
InterPro Amelogenin UniProtKB/TrEMBL
NCBI Gene AMELX ENTREZGENE
PANTHER AMELOGENIN, X ISOFORM UniProtKB/TrEMBL
  AMELOGENIN, Y ISOFORM UniProtKB/TrEMBL
Pfam Amelogenin UniProtKB/TrEMBL
PRINTS AMELOGENIN UniProtKB/TrEMBL
SMART Amelogenin UniProtKB/TrEMBL
UniProt A0A2R8ZWX2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZY20 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9A2H0 ENTREZGENE, UniProtKB/TrEMBL