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Gene: THSD8 (thrombospondin type 1 domain containing 8) Pan paniscus

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Symbol:

THSD8

Name:

thrombospondin type 1 domain containing 8

RGD ID:

329331981

Description:

ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN external side of plasma membrane (ortholog); sperm head plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

thrombospondin type-1 domain-containing protein 8

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	17,730,785 - 17,735,994 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	16,731,366 - 16,736,584 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1 Ensembl	19	13,107,406 - 13,109,635 (+)	Ensembl	panpan1.1		panPan2

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Prostatic Neoplasms (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

external side of plasma membrane (ISO)

sperm head plasma membrane (ISO)

References

Genomics

Comparative Map Data

THSD8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	17,730,785 - 17,735,994 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	16,731,366 - 16,736,584 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1 Ensembl	19	13,107,406 - 13,109,635 (+)	Ensembl	panpan1.1		panPan2

THSD8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	12,802,069 - 12,804,389 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	12,802,031 - 12,813,581 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	12,912,883 - 12,915,203 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Cytogenetic Map	19	p13.13	NCBI
T2T-CHM13v2.0	19	12,926,574 - 12,928,889 (+)	NCBI		T2T-CHM13v2.0

Adam26a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	44,021,310 - 44,029,744 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	44,021,315 - 44,029,744 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	43,568,273 - 43,576,707 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	43,568,278 - 43,576,707 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	44,653,627 - 44,662,061 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	45,067,090 - 45,075,483 (-)	NCBI		MGSCv36	mm8
Celera	8	46,254,925 - 46,263,359 (-)	NCBI		Celera
Cytogenetic Map	8	A4	NCBI
cM Map	8	24.02	NCBI

Thsd8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	23,186,394 - 23,188,323 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	23,186,364 - 23,196,042 (+)	Ensembl		mRatBN7.2 Ensembl
Cytogenetic Map	19	q11	NCBI

THSD8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	20	49,224,524 - 49,227,082 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	49,869,308 - 49,871,867 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	20	49,080,437 - 49,082,993 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	49,506,730 - 49,509,290 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	49,749,381 - 49,751,939 (-)	NCBI		UU_Cfam_GSD_1.0

Thsd8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	208,453,734 - 208,456,935 (-)	NCBI		HiC_Itri_2

THSD8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666074	8,302,316 - 8,306,383 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_034944744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000032209 ⟹ ENSPPAP00000009566

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	13,107,406 - 13,109,635 (+)	Ensembl

RefSeq Acc Id:

XM_034944744 ⟹ XP_034800635

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	17,730,785 - 17,735,994 (+)	NCBI
NHGRI_mPanPan1	19	16,731,366 - 16,736,584 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_034800635	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000009566.1

RefSeq Acc Id:	XP_034800635 ⟸ XM_034944744
- UniProtKB:	A0A2R8ZX59 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSPPAP00000009566 ⟸ ENSPPAT00000032209

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000028013	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000032209.1	UniProtKB/TrEMBL
NCBI Gene	THSD8	ENTREZGENE
UniProt	A0A2R8ZX59	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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