Nid1 (nidogen 1) - Rat Genome Database

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Gene: Nid1 (nidogen 1) Rattus norvegicus
Analyze
Symbol: Nid1
Name: nidogen 1
RGD ID: 3178
Description: Predicted to enable collagen binding activity; laminin-1 binding activity; and proteoglycan binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within cell-matrix adhesion; glomerular basement membrane development; and positive regulation of cell-substrate adhesion. Located in extracellular matrix. Orthologous to human NID1 (nidogen 1); INTERACTS WITH 1,3-dinitrobenzene; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: entactin; Nid; NID-1; nidogen (entactin); nidogen-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81793,069,013 - 93,142,416 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1793,069,278 - 93,142,386 (+)EnsemblGRCr8
mRatBN7.21786,085,133 - 86,158,272 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1786,085,077 - 86,158,267 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1790,329,167 - 90,402,263 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01794,165,066 - 94,238,159 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01788,181,572 - 88,254,677 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01790,553,161 - 90,627,133 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1790,553,394 - 90,627,101 (-)Ensemblrn6Rnor6.0
Rnor_5.01792,213,995 - 92,287,999 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41766,857,529 - 66,930,273 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1785,451,906 - 85,525,217 (-)NCBICelera
RGSC_v3.11766,907,493 - 66,916,781 (-)NCBI
Cytogenetic Map17q12.3NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,3-dinitrobenzene  (EXP)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
4-nonylphenol  (ISO)
4-tert-Octylphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (EXP,ISO)
acrylamide  (EXP,ISO)
actinonin  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bilirubin IXalpha  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
choline  (ISO)
cisplatin  (EXP,ISO)
clotrimazole  (EXP)
Cuprizon  (EXP)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
diquat  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hydroquinone  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
levonorgestrel  (ISO)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP,ISO)
N-nitrosodimethylamine  (EXP)
nickel sulfate  (ISO)
nimesulide  (EXP)
Nivalenol  (ISO)
oxaliplatin  (EXP)
p-tert-Amylphenol  (ISO)
p-toluidine  (EXP)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
progesterone  (ISO)
retinyl acetate  (ISO)
rimonabant  (ISO)
rotenone  (EXP)
Salinomycin  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (EXP,ISO)
sodium fluoride  (ISO)
Soman  (EXP)
Tesaglitazar  (EXP)
testosterone  (ISO)
testosterone undecanoate  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Carboxyl-terminal sequence of entactin deduced from a cDNA clone. Durkin ME, etal., Proc Natl Acad Sci U S A 1987 Mar;84(6):1570-4.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Laminin-6 assembles into multimolecular fibrillar complexes with perlecan and participates in mechanical-signal transduction via a dystroglycan-dependent, integrin-independent mechanism. Jones JC, etal., J Cell Sci. 2005 Jun 15;118(Pt 12):2557-66. Epub 2005 May 31.
5. Identification of the basement membrane protein nidogen as a candidate ligand for tumor endothelial marker 7 in vitro and in vivo. Lee HK, etal., FEBS Lett. 2006 Apr 17;580(9):2253-7. Epub 2006 Mar 20.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:3264556   PMID:7670489   PMID:10639489   PMID:10727019   PMID:12051813   PMID:12243745   PMID:12588956   PMID:14566019   PMID:15895400   PMID:16330543   PMID:16607619   PMID:16618944  
PMID:17437540   PMID:17517882   PMID:17570475   PMID:17596926   PMID:18757743   PMID:19056867   PMID:19295126   PMID:20551380   PMID:22952693   PMID:23376485   PMID:23533145   PMID:23658023  
PMID:24006456   PMID:27068509   PMID:27559042   PMID:29476059  


Genomics

Comparative Map Data
Nid1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81793,069,013 - 93,142,416 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1793,069,278 - 93,142,386 (+)EnsemblGRCr8
mRatBN7.21786,085,133 - 86,158,272 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1786,085,077 - 86,158,267 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1790,329,167 - 90,402,263 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01794,165,066 - 94,238,159 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01788,181,572 - 88,254,677 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01790,553,161 - 90,627,133 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1790,553,394 - 90,627,101 (-)Ensemblrn6Rnor6.0
Rnor_5.01792,213,995 - 92,287,999 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41766,857,529 - 66,930,273 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1785,451,906 - 85,525,217 (-)NCBICelera
RGSC_v3.11766,907,493 - 66,916,781 (-)NCBI
Cytogenetic Map17q12.3NCBI
NID1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381235,975,830 - 236,065,090 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1235,975,830 - 236,065,109 (-)Ensemblhg38GRCh38
GRCh371236,139,130 - 236,228,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361234,205,753 - 234,295,104 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341232,466,151 - 232,554,503NCBI
Celera1209,382,414 - 209,471,741 (-)NCBICelera
Cytogenetic Map1q42.3NCBI
HuRef1206,590,270 - 206,679,579 (-)NCBIHuRef
CHM1_11237,411,406 - 237,500,740 (-)NCBICHM1_1
T2T-CHM13v2.01235,372,074 - 235,461,403 (-)NCBIT2T-CHM13v2.0
Nid1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391313,612,252 - 13,686,849 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1313,612,136 - 13,686,854 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381313,437,602 - 13,512,275 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1313,437,551 - 13,512,269 (+)Ensemblmm10GRCm38
MGSCv371313,529,869 - 13,604,542 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361312,880,801 - 12,929,308 (+)NCBIMGSCv36mm8
MGSCv361313,229,817 - 13,304,390 (+)NCBIMGSCv36mm8
Celera1313,574,663 - 13,580,605 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map135.26NCBI
Nid1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554924,014,912 - 4,096,829 (+)Ensembl
ChiLan1.0NW_0049554924,014,912 - 4,096,659 (+)NCBIChiLan1.0ChiLan1.0
NID1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2113,114,692 - 13,203,241 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,326,559 - 13,415,078 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01211,543,294 - 211,631,769 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11216,544,821 - 216,632,935 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1216,544,829 - 216,632,935 (-)EnsemblpanPan2panpan1.1
NID1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.143,935,218 - 4,018,133 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl43,935,223 - 4,017,300 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha43,981,575 - 4,064,476 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.043,955,978 - 4,038,945 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl43,955,982 - 4,038,935 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.143,968,163 - 4,051,014 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.044,085,771 - 4,168,637 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.044,306,838 - 4,389,727 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nid1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934440,456,408 - 40,526,088 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648416,621,601 - 16,691,313 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648416,621,666 - 16,691,304 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NID1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1455,239,577 - 55,390,782 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11455,239,327 - 55,346,948 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21459,435,378 - 59,454,804 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NID1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12573,130,966 - 73,227,385 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2573,130,448 - 73,227,349 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605575,181,369 - 75,276,675 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nid1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477514,486,145 - 14,563,447 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477514,486,357 - 14,563,341 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Nid1
362 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:32
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000003349
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat

Markers in Region
D17Got220  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21786,150,757 - 86,151,028 (-)MAPPERmRatBN7.2
Rnor_6.01790,560,409 - 90,560,679NCBIRnor6.0
Rnor_5.01792,221,243 - 92,221,513UniSTSRnor5.0
RGSC_v3.41766,863,094 - 66,863,364UniSTSRGSC3.4
Celera1785,459,154 - 85,459,424UniSTS
Cytogenetic Map17q12.1UniSTS
L17324  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21786,108,576 - 86,108,731 (-)MAPPERmRatBN7.2
Rnor_6.01790,603,318 - 90,603,472NCBIRnor6.0
Rnor_5.01792,264,152 - 92,264,306UniSTSRnor5.0
RGSC_v3.41766,905,748 - 66,905,902UniSTSRGSC3.4
Celera1785,501,565 - 85,501,719UniSTS
Cytogenetic Map17q12.1UniSTS
Nid1  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.41766,905,804 - 66,905,957UniSTSRGSC3.4
RGSC_v3.41766,857,739 - 66,857,889UniSTSRGSC3.4
Celera1785,453,799 - 85,453,949UniSTS
Celera1785,501,621 - 85,501,774UniSTS
Nid1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01792,264,208 - 92,264,361UniSTSRnor5.0
RGSC_v3.41766,905,804 - 66,905,957UniSTSRGSC3.4
Celera1785,501,621 - 85,501,774UniSTS
Cytogenetic Map17q12.1UniSTS
Nid1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01792,215,888 - 92,216,038UniSTSRnor5.0
RGSC_v3.41766,857,739 - 66,857,889UniSTSRGSC3.4
Celera1785,453,799 - 85,453,949UniSTS
Cytogenetic Map17q12.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 34 59 6 298 134 11 141 81 92 31 15 15

Sequence


Ensembl Acc Id: ENSRNOT00000003349   ⟹   ENSRNOP00000003349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1793,069,278 - 93,142,386 (+)Ensembl
mRatBN7.2 Ensembl1786,085,077 - 86,158,267 (+)Ensembl
Rnor_6.0 Ensembl1790,553,394 - 90,627,101 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000168239   ⟹   ENSRNOP00000099444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1793,069,278 - 93,142,386 (+)Ensembl
RefSeq Acc Id: NM_001398520   ⟹   NP_001385449
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81793,069,286 - 93,142,416 (+)NCBI
mRatBN7.21786,085,133 - 86,158,272 (+)NCBI
RefSeq Acc Id: XM_063276080   ⟹   XP_063132150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81793,069,013 - 93,142,416 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001385449 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132150 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41120 (Get FASTA)   NCBI Sequence Viewer  
  CAA11963 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003349
GenBank Protein P08460 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000003349   ⟸   ENSRNOT00000003349
RefSeq Acc Id: NP_001385449   ⟸   NM_001398520
- Peptide Label: precursor
- UniProtKB: F1LM84 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132150   ⟸   XM_063276080
- Peptide Label: isoform X1
- UniProtKB: F1LM84 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000099444   ⟸   ENSRNOT00000168239
Protein Domains
EGF-like   NIDO   Nidogen G2 beta-barrel   Thyroglobulin type-1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P08460-F1-model_v2 AlphaFold P08460 1-324 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700620
Promoter ID:EPDNEW_R11143
Type:initiation region
Name:Nid1_1
Description:nidogen 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01790,627,022 - 90,627,082EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3178 AgrOrtholog
BioCyc Gene G2FUF-8452 BioCyc
Ensembl Genes ENSRNOG00000002461 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000003349 ENTREZGENE
InterPro Epithelial_Barrier/Signaling UniProtKB/Swiss-Prot
  NIDO_dom UniProtKB/Swiss-Prot
NCBI Gene 25494 ENTREZGENE
PANTHER MUCIN 4-RELATED UniProtKB/Swiss-Prot
  MUCIN-4 UniProtKB/Swiss-Prot
Pfam NIDO UniProtKB/Swiss-Prot
PhenoGen Nid1 PhenoGen
PROSITE ASX_HYDROXYL UniProtKB/Swiss-Prot
  NIDO UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002461 RatGTEx
SMART NIDO UniProtKB/Swiss-Prot
TIGR TC202981
UniProt F1LM84 ENTREZGENE, UniProtKB/TrEMBL
  NID1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q712L9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-11-17 Nid1  nidogen 1  Nid  nidogen (entactin)  Symbol and Name updated 1299863 APPROVED
2002-11-06 Nid  nidogen (entactin)    Nidogen (entactin)  Name updated 625702 APPROVED
2002-06-10 Nid  Nidogen (entactin)      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 143 kDa 728973