Mt1-ps2 (metallothionein 1, pseudogene 2) - Rat Genome Database

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Gene: Mt1-ps2 (metallothionein 1, pseudogene 2) Rattus norvegicus
Analyze
Symbol: Mt1-ps2
Name: metallothionein 1, pseudogene 2
RGD ID: 3119
Description: INTERACTS WITH atorvastatin calcium; fructose
Type: pseudo  of Mt1  
RefSeq Status: INFERRED
Previously known as: metallothionein 1, pseudogene B; Mt1pb
Related Functional Gene: Mt1  
Is Marker For: QTLs:   Bp18  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release; Note: This pseudogene (GeneID 24569) was annotated incorrectly on chromosome 19 on the reference and Celera assemblies of NCBI's build 4.2, in a location overlapping the related functional gene, GeneID 24567. This pseudogene, defined by sequence within the repeat regions of M11797.1, is believed to be on rat chromosome 2 but appears to be absent from the strains represented in this region of either rat genome assembly. [17 Jun 2014]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
UTH_Rnor_SHR_Utx250,398,741 - 50,399,130 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0248,457,196 - 48,457,585 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0243,308,711 - 43,309,100 (+)NCBIRnor_WKY
RGSC_v3.4211,261,631 - 11,262,790 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11911,266,456 - 11,267,616 (-)NCBI
Cytogenetic Map2 NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Rat metallothionein-1 structural gene and three pseudogenes, one of which contains 5'-regulatory sequences. Andersen RD, etal., Mol Cell Biol 1986 Jan;6(1):302-14.
2. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. A biometrical genome search in rats reveals the multigenic basis of blood pressure variation. Schork NJ, etal., Genome Res 1995 Sep;5(2):164-72

Genomics

Markers in Region
D2Mit3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2243,283,331 - 43,283,515 (+)MAPPERmRatBN7.2
Rnor_6.0243,262,087 - 43,262,270NCBIRnor6.0
Rnor_5.0262,308,480 - 62,308,663UniSTSRnor5.0
RGSC_v3.4242,994,822 - 42,995,006RGDRGSC3.4
RGSC_v3.4242,994,823 - 42,995,006UniSTSRGSC3.4
RGSC_v3.1242,919,599 - 42,919,783RGD
Celera239,068,986 - 39,069,169UniSTS
Cytogenetic Map2 RGD
D2Wox12  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2243,283,300 - 43,283,432 (+)MAPPERmRatBN7.2
Rnor_6.0243,262,056 - 43,262,187NCBIRnor6.0
Rnor_5.0262,308,449 - 62,308,580UniSTSRnor5.0
RGSC_v3.4242,994,791 - 42,994,923RGDRGSC3.4
RGSC_v3.4242,994,792 - 42,994,923UniSTSRGSC3.4
RGSC_v3.1242,919,568 - 42,919,700RGD
Celera239,068,955 - 39,069,086UniSTS
RH 3.4 Map2206.2UniSTS
RH 3.4 Map2206.2RGD
RH 2.0 Map2244.8RGD
Cytogenetic Map2 RGD


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_001601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide M11797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 24569 ENTREZGENE
PhenoGen Mt1-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-04-21 Mt1-ps2  metallothionein 1, pseudogene 2  Mt1pb  metallothionein 1, pseudogene B  Symbol and Name updated 1299863 APPROVED
2002-06-10 Mt1pb  Metallothionein 1, pseudogene B      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_transcript no detectable transcripts from this pseudogene 633228