Gjd2 (gap junction protein, delta 2) - Rat Genome Database

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Gene: Gjd2 (gap junction protein, delta 2) Rattus norvegicus
Analyze
Symbol: Gjd2
Name: gap junction protein, delta 2
RGD ID: 2694
Description: Predicted to enable gap junction channel activity. Involved in cell-cell signaling. Located in gap junction. Orthologous to human GJD2 (gap junction protein delta 2); INTERACTS WITH 6-propyl-2-thiouracil; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: connexin s; connexin-36; Cx36; Cxns; gap junction alpha-9 protein; gap junction delta-2 protein; gap junction membrane channel protein alpha 9; Gja9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83121,226,372 - 121,229,367 (-)NCBIGRCr8
mRatBN7.23100,771,450 - 100,776,134 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3100,772,062 - 100,775,061 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3104,397,810 - 104,400,795 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03112,996,848 - 112,999,833 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03110,686,667 - 110,689,652 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03105,467,480 - 105,470,475 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3105,467,480 - 105,470,475 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03112,039,996 - 112,045,600 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4399,861,099 - 99,864,094 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1399,757,526 - 99,760,522 (-)NCBI
Celera399,741,517 - 99,744,512 (-)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
connexin complex  (IBA)
gap junction  (IDA,TAS)
synapse  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Cx36 and the function of endocrine pancreas. Calabrese A, etal., Cell Commun Adhes 2001;8(4-6):387-91.
2. Association of connexin36 and zonula occludens-1 with zonula occludens-2 and the transcription factor zonula occludens-1-associated nucleic acid-binding protein at neuronal gap junctions in rodent retina. Ciolofan C, etal., Neuroscience. 2006 Jun 30;140(2):433-51. Epub 2006 May 2.
3. Cellular expression of connexins in the rat brain: neuronal localization, effects of kainate-induced seizures and expression in apoptotic neuronal cells. Condorelli DF, etal., Eur J Neurosci 2003 Oct;18(7):1807-27.
4. Synchronous activity of inhibitory networks in neocortex requires electrical synapses containing connexin36. Deans MR, etal., Neuron 2001 Aug 16;31(3):477-85.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. Identification of cells expressing Cx43, Cx30, Cx26, Cx32 and Cx36 in gap junctions of rat brain and spinal cord. Rash JE, etal., Cell Commun Adhes 2001;8(4-6):315-20.
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. The murine gap junction gene connexin36 is highly expressed in mouse retina and regulated during brain development. Sohl G, etal., FEBS Lett 1998 May 22;428(1-2):27-31.
12. Differential expression of hippocampal connexins after acute hypoxia in the developing brain. Zeinieh MP, etal., Brain Dev. 2010 Nov;32(10):810-7. doi: 10.1016/j.braindev.2009.11.003. Epub 2010 Jan 19.
Additional References at PubMed
PMID:12766175   PMID:14565956   PMID:15011262   PMID:15173637   PMID:15608630   PMID:15659592   PMID:16138316   PMID:16263767   PMID:17113924   PMID:17122364   PMID:17601673   PMID:18073214  
PMID:18211823   PMID:18280223   PMID:19038327   PMID:19940186   PMID:20153799   PMID:20361177   PMID:21408068   PMID:22158029   PMID:22771400   PMID:23613279   PMID:24096873   PMID:24304165  
PMID:24735890   PMID:24883012   PMID:25110193   PMID:25966616   PMID:26188286   PMID:26268619   PMID:27462070   PMID:27913256   PMID:28042145   PMID:28561933   PMID:28617431   PMID:29746991  
PMID:30016355   PMID:31091986   PMID:31557934   PMID:36471528  


Genomics

Comparative Map Data
Gjd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83121,226,372 - 121,229,367 (-)NCBIGRCr8
mRatBN7.23100,771,450 - 100,776,134 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3100,772,062 - 100,775,061 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3104,397,810 - 104,400,795 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03112,996,848 - 112,999,833 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03110,686,667 - 110,689,652 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03105,467,480 - 105,470,475 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3105,467,480 - 105,470,475 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03112,039,996 - 112,045,600 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4399,861,099 - 99,864,094 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1399,757,526 - 99,760,522 (-)NCBI
Celera399,741,517 - 99,744,512 (-)NCBICelera
Cytogenetic Map3q35NCBI
GJD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381534,751,032 - 34,754,998 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1534,751,032 - 34,754,998 (-)EnsemblGRCh38hg38GRCh38
GRCh371535,043,233 - 35,047,199 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361532,831,971 - 32,833,981 (-)NCBINCBI36Build 36hg18NCBI36
Build 341532,831,970 - 32,833,981NCBI
Celera1511,803,998 - 11,806,010 (-)NCBICelera
Cytogenetic Map15q14NCBI
HuRef1511,890,370 - 11,892,512 (-)NCBIHuRef
CHM1_11535,162,609 - 35,164,751 (-)NCBICHM1_1
T2T-CHM13v2.01532,556,224 - 32,560,189 (-)NCBIT2T-CHM13v2.0
Gjd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392113,840,086 - 113,844,555 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2113,840,082 - 113,844,100 (-)EnsemblGRCm39 Ensembl
GRCm382114,009,601 - 114,014,378 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2114,009,601 - 114,013,619 (-)EnsemblGRCm38mm10GRCm38
MGSCv372113,835,337 - 113,839,355 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362113,701,042 - 113,705,060 (-)NCBIMGSCv36mm8
Celera2115,138,762 - 115,142,782 (-)NCBICelera
Cytogenetic Map2E4NCBI
cM Map257.54NCBI
Gjd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554162,104,985 - 2,134,937 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554162,104,985 - 2,134,937 (-)NCBIChiLan1.0ChiLan1.0
GJD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21623,967,061 - 23,970,886 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11528,115,454 - 28,119,280 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01513,668,639 - 13,672,691 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11531,928,451 - 31,930,985 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1531,928,157 - 31,931,474 (-)Ensemblpanpan1.1panPan2
GJD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1302,477,341 - 2,481,058 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl302,477,335 - 2,481,306 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha302,528,710 - 2,531,644 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0302,592,034 - 2,594,968 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl302,591,351 - 2,594,757 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1302,528,971 - 2,531,908 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0302,627,157 - 2,630,094 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0302,755,935 - 2,758,869 (-)NCBIUU_Cfam_GSD_1.0
Gjd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864081,018,609 - 81,022,515 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366731,128,930 - 1,134,905 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366731,129,750 - 1,133,229 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GJD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1136,324,192 - 136,327,347 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11136,310,759 - 136,328,060 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21152,452,624 - 152,456,428 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GJD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12648,149,568 - 48,152,466 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2648,149,755 - 48,153,660 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604892,757,000 - 92,760,060 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gjd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248041,961,865 - 1,965,673 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248041,962,597 - 1,965,598 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gjd2
10 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:478
Count of miRNA genes:256
Interacting mature miRNAs:314
Transcripts:ENSRNOT00000011078
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)396127817115665732Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)380800231114297550Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1582252Sual1Serum uric acid level QTL 13.40.0123blood uric acid amount (VT:0010302)blood uric acid level (CMO:0000501)396127817102200699Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat

Markers in Region
BB391717  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23100,771,612 - 100,771,701 (+)MAPPERmRatBN7.2
Rnor_6.03105,467,027 - 105,467,115NCBIRnor6.0
Rnor_5.03112,040,477 - 112,040,565UniSTSRnor5.0
RGSC_v3.4399,860,646 - 99,860,734UniSTSRGSC3.4
Celera399,741,064 - 99,741,152UniSTS
Cytogenetic Map3q35UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 5 7 108 32 19 8 2 8 1 65 25 93 19 45 11

Sequence


Ensembl Acc Id: ENSRNOT00000011078   ⟹   ENSRNOP00000011078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3100,772,062 - 100,775,061 (-)Ensembl
Rnor_6.0 Ensembl3105,467,480 - 105,470,475 (-)Ensembl
RefSeq Acc Id: NM_019281   ⟹   NP_062154
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83121,226,372 - 121,229,367 (-)NCBI
mRatBN7.23100,772,066 - 100,775,061 (-)NCBI
Rnor_6.03105,467,480 - 105,470,475 (-)NCBI
Rnor_5.03112,039,996 - 112,045,600 (-)NCBI
RGSC_v3.4399,861,099 - 99,864,094 (-)RGD
Celera399,741,517 - 99,744,512 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_062154 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA76528 (Get FASTA)   NCBI Sequence Viewer  
  CAC14913 (Get FASTA)   NCBI Sequence Viewer  
  EDL79821 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011078.1
  ENSRNOP00055003218
  ENSRNOP00060028758
  ENSRNOP00065020622
GenBank Protein O70610 (Get FASTA)   NCBI Sequence Viewer  
  VZP20210 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_062154   ⟸   NM_019281
- UniProtKB: Q9ER25 (UniProtKB/Swiss-Prot),   O70610 (UniProtKB/Swiss-Prot),   A6HP70 (UniProtKB/TrEMBL),   A0A654IEW5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011078   ⟸   ENSRNOT00000011078
Protein Domains
Connexin N-terminal   Gap junction protein cysteine-rich

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70610-F1-model_v2 AlphaFold O70610 1-321 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2694 AgrOrtholog
BioCyc Gene G2FUF-48354 BioCyc
Ensembl Genes ENSRNOG00000008337 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055002768 UniProtKB/Swiss-Prot
  ENSRNOG00060020218 UniProtKB/Swiss-Prot
  ENSRNOG00065015799 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000011078.4 UniProtKB/Swiss-Prot
  ENSRNOT00055004344 UniProtKB/Swiss-Prot
  ENSRNOT00060035004 UniProtKB/Swiss-Prot
  ENSRNOT00065026239 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.1440.80 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Connexin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Connexin36 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Connexin_CCC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Connexin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Connexin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Connexin_N_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:50564 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 50564 ENTREZGENE
PANTHER CONNEXIN UniProtKB/TrEMBL
  GAP JUNCTION DELTA-2 PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11984 UniProtKB/Swiss-Prot
Pfam Connexin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gjd2 PhenoGen
PRINTS CONNEXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CONNEXIN36 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CONNEXINS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CONNEXINS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008337 RatGTEx
  ENSRNOG00055002768 RatGTEx
  ENSRNOG00060020218 RatGTEx
  ENSRNOG00065015799 RatGTEx
SMART CNX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Connexin_CCC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A654IEW5 ENTREZGENE, UniProtKB/TrEMBL
  A6HP70 ENTREZGENE, UniProtKB/TrEMBL
  CXD2_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q9ER25 ENTREZGENE
UniProt Secondary Q9ER25 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-25 Gjd2  gap junction protein, delta 2  Gja9  gap junction membrane channel protein alpha 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Gja9  gap junction membrane channel protein alpha 9      Name updated 70584 APPROVED