Fgg (fibrinogen gamma chain) - Rat Genome Database

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Gene: Fgg (fibrinogen gamma chain) Rattus norvegicus
Analyze
Symbol: Fgg
Name: fibrinogen gamma chain
RGD ID: 2613
Description: Enables identical protein binding activity. Involved in cellular response to interleukin-1; cellular response to interleukin-6; and platelet maturation. Located in blood microparticle. Biomarker of myocardial infarction; obesity; pancreatitis; and pulmonary embolism. Human ortholog(s) of this gene implicated in brain small vessel disease; congenital afibrinogenemia; and multiple myeloma. Orthologous to human FGG (fibrinogen gamma chain); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: fibrinogen, gamma polypeptide
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Is Marker For: Strains:   SS.MNS-(D2Chm25-Fgg)/Ayd  
QTLs:   Bp257  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82170,652,929 - 170,660,372 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2170,652,234 - 170,661,170 (+)EnsemblGRCr8
mRatBN7.22168,354,880 - 168,362,325 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2168,355,013 - 168,362,322 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2175,545,169 - 175,552,469 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02173,566,102 - 173,573,404 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02168,167,520 - 168,174,818 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02181,987,080 - 181,994,523 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2181,987,217 - 181,994,514 (+)Ensemblrn6Rnor6.0
Rnor_5.02201,401,700 - 201,409,143 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42174,727,312 - 174,734,594 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2162,381,731 - 162,389,018 (+)NCBICelera
RGSC_v3.12174,677,417 - 174,684,698 (+)NCBI
Cytogenetic Map2q34NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1-naphthyl isothiocyanate  (ISO)
1-Oleoyl-2-acetyl-sn-glycerol  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
Abemaciclib  (ISO)
acetamide  (EXP)
acetylsalicylic acid  (ISO)
ADP  (ISO)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arachidonyl-2'-chloroethylamide  (ISO)
aristolochic acids  (EXP)
Azaspiracid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bexarotene  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bromobenzene  (EXP)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcium silicate  (ISO)
carbon nanotube  (EXP,ISO)
carnosic acid  (ISO)
CGP 52608  (ISO)
CHIR 99021  (ISO)
chlorpyrifos  (ISO)
chromium trinitrate  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (EXP)
crocidolite asbestos  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
D-glucose  (ISO)
dabigatran  (ISO)
dibenz[a,h]anthracene  (ISO)
diclofenac  (EXP)
dicrotophos  (ISO)
dienogest  (ISO)
diethyl maleate  (ISO)
diethyl phthalate  (EXP)
diisopropyl fluorophosphate  (EXP)
dimethyl sulfoxide  (EXP)
dioxygen  (ISO)
diquat  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
drometrizole  (ISO)
elemental selenium  (EXP)
endosulfan  (EXP)
fenofibrate  (EXP)
fenthion  (ISO)
folic acid  (ISO)
fructose  (ISO)
furan  (EXP)
gemcitabine  (ISO)
gestodene  (ISO)
glucose  (ISO)
glyphosate  (ISO)
graphene oxide  (ISO)
hyaluronic acid  (EXP)
hydrogen peroxide  (EXP,ISO)
icariin  (ISO)
inulin  (ISO)
L-ascorbic acid  (ISO)
L-ascorbic acid 2-phosphate  (ISO)
lead diacetate  (ISO)
levonorgestrel  (ISO)
malathion  (ISO)
menadione  (ISO)
methidathion  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (EXP)
natamycin  (ISO)
nefazodone  (EXP)
nitrofen  (EXP)
norethisterone  (ISO)
norgestimate  (ISO)
nystatin  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorobutanesulfonic acid  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl caffeate  (EXP)
phenylmercury acetate  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propanal  (ISO)
quartz  (EXP)
quercetin  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
selenium atom  (EXP)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (EXP,ISO)
sodium fluoride  (EXP)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
titanium dioxide  (EXP,ISO)
tremolite asbestos  (ISO)
tributylstannane  (ISO)
Triptolide  (EXP)
urethane  (ISO)
ursodeoxycholic acid  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vitamin E  (EXP)
vitamin K  (EXP)
XAV939  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Hepatic fibrinogen storage disease: identification of two novel mutations (p.Asp316Asn, fibrinogen Pisa and p.Gly366Ser, fibrinogen Beograd) impacting on the fibrinogen gamma-module. Asselta R, etal., J Thromb Haemost. 2015 Aug;13(8):1459-67. doi: 10.1111/jth.13021. Epub 2015 Jul 14.
2. Molecular characterization of 7 patients affected by dys- or hypo-dysfibrinogenemia: Identification of a novel mutation in the fibrinogen Bbeta chain causing a gain of glycosylation. Asselta R, etal., Thromb Res. 2015 Jul;136(1):168-74. doi: 10.1016/j.thromres.2015.05.007. Epub 2015 May 14.
3. Novel fibrinogen gamma375 Arg-->Trp mutation (fibrinogen aguadilla) causes hepatic endoplasmic reticulum storage and hypofibrinogenemia. Brennan SO, etal., Hepatology. 2002 Sep;36(3):652-8.
4. Abnormal expression of Smurf2 during the process of rat liver fibrosis. Cai Y, etal., Chin J Dig Dis. 2006;7(4):237-45.
5. Associations between common fibrinogen gene polymorphisms and cardiovascular disease in older adults. The Cardiovascular Health Study. Carty CL, etal., Thromb Haemost. 2008 Feb;99(2):388-95.
6. Quantitative organellar proteomics analysis of rough endoplasmic reticulum from normal and acute pancreatitis rat pancreas. Chen X, etal., J Proteome Res. 2010 Feb 5;9(2):885-96.
7. Profiling of gender-specific rat plasma proteins associated with susceptibility or resistance to diet-induced obesity. Choi JW, etal., J Proteomics. 2012 Feb 2;75(4):1386-400. doi: 10.1016/j.jprot.2011.11.012. Epub 2011 Nov 20.
8. Developmental expression of mRNAs encoding platelet proteins in rat megakaryocytes. Courtney MA, etal., Blood. 1991 Feb 1;77(3):560-8.
9. Organization of the rat gamma-fibrinogen gene: alternative mRNA splice patterns produce the gamma A and gamma B (gamma ') chains of fibrinogen. Crabtree GR and Kant JA, Cell 1982 Nov;31(1):159-66.
10. [Comparative plasma proteomic analysis of patients with multiple myeloma treated with bortezomib-based regimens]. Cumova J, etal., Klin Onkol. 2012;25(1):17-25.
11. Mapping of a quantitative trait locus for blood pressure on rat chromosome 2. Deng AY, etal., J Clin Invest 1994 Jul;94(1):431-6
12. Mapping of rat chromosome 2 markers generated from chromosome-sorted DNA. Deng AY, etal., Mamm Genome 1997 Oct;8(10):731-5.
13. Potential basis for regulation of the coordinately expressed fibrinogen genes: homology in the 5' flanking regions. Fowlkes DM, etal., Proc Natl Acad Sci U S A 1984 Apr;81(8):2313-6.
14. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
15. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
16. Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury. Gralinski LE, etal., mBio. 2013 Aug 6;4(4). pii: mBio.00271-13. doi: 10.1128/mBio.00271-13.
17. Identification of a novel splicing mutation in the fibrinogen gamma chain gene leading to dysfibrinogenaemia in a Chinese pedigree. Huang D, etal., Pathology. 2015 Feb;47(2):145-50. doi: 10.1097/PAT.0000000000000213.
18. Haemostatic abnormalities persist despite glycaemic improvement by insulin therapy in lean type 2 diabetic patients. Knobl P, etal., Thromb Haemost. 1994 Jun;71(6):692-7.
19. Fibrinogen beta-derived Bbeta(15-42) peptide protects against kidney ischemia/reperfusion injury. Krishnamoorthy A, etal., Blood. 2011 Aug 18;118(7):1934-42. Epub 2011 Jun 17.
20. Improved radiation hybrid map of rat chromosome 2: colocalization of the genes encoding corticotropin-releasing hormone and IL6-receptor with quantitative trait loci regulating the inflammatory response. Laes JF, etal., Cytogenet Cell Genet 2001;92(1-2):130-3.
21. ICAM1 and fibrinogen-gamma are increased in uterine epithelial cells at the time of implantation in rats. Lecce L, etal., Mol Reprod Dev. 2011 May;78(5):318-27. doi: 10.1002/mrd.21307. Epub 2011 Mar 29.
22. Fibrinogen Hangzhou: congenital dysfibrinogenemia caused by the novel missense mutation in FGG (gamma308Asn-->Thr). Liao Z, etal., Clin Chim Acta. 2014 Jan 20;428:106-9.
23. Basic mechanisms and regulation of fibrinolysis. Longstaff C and Kolev K, J Thromb Haemost. 2015 Jun;13 Suppl 1:S98-105. doi: 10.1111/jth.12935.
24. A G-to-A mutation in IVS-3 of the human gamma fibrinogen gene causing afibrinogenemia due to abnormal RNA splicing. Margaglione M, etal., Blood 2000 Oct 1;96(7):2501-5.
25. Novel fibrinogen mutation (gamma 313 Ser-->Asn) associated with hypofibrinogenemia in two unrelated families. Meyer M, etal., Blood Coagul Fibrinolysis. 2006 Jan;17(1):63-7.
26. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
27. Nucleotide sequence of the gamma chain gene of rat fibrinogen: conserved intronic sequences. Morgan JG, etal., Nucleic Acids Res 1987 Mar 25;15(6):2774-6.
28. Fibrinogen and fibrin structure and functions. Mosesson MW J Thromb Haemost. 2005 Aug;3(8):1894-904.
29. Plasma fibrinogen gamma' chain content in the thrombotic microangiopathy syndrome. Mosesson MW, etal., J Thromb Haemost. 2007 Jan;5(1):62-9. Epub 2006 Oct 13.
30. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
31. Expression and analysis of a split premature termination codon in FGG responsible for congenital afibrinogenemia: escape from RNA surveillance mechanisms in transfected cells. Neerman-Arbez M, etal., Blood. 2004 Dec 1;104(12):3618-23. Epub 2004 Jul 29.
32. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
33. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
34. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
35. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
36. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
37. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
38. Comprehensive gene review and curation RGD comprehensive gene curation
39. The responses of rat liver glucocorticoid receptors and genes for tyrosine aminotransferase, alpha-2-macroglobulin and gamma-fibrinogen to adrenalectomy-, dexamethasone- and inflammation-induced changes in the levels of glucocorticoids and proinflammatory cytokines. Sevaljevic L, etal., Biol Signals Recept. 2001 Sep-Oct;10(5):299-309.
40. Fibrinogen Seoul (FGG Ala341Asp): a novel mutation associated with hypodysfibrinogenemia. Song KS, etal., Clin Appl Thromb Hemost. 2006 Jul;12(3):338-43.
41. Molecular basis of quantitative fibrinogen disorders in 27 patients from India. Sumitha E, etal., Haemophilia. 2013 Jul;19(4):611-8. doi: 10.1111/hae.12143. Epub 2013 Apr 8.
42. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
43. Ability of fibrinogen gamma-derived dodecapeptides with different sequences to bind to rat platelets. Tokutomi K, etal., Int J Pharm. 2012 Nov 15;438(1-2):296-301. doi: 10.1016/j.ijpharm.2012.09.016. Epub 2012 Sep 15.
44. Proteomic analysis of plasma from rats following total parenteral nutrition-induced liver injury. Tsai JJ, etal., Proteomics. 2015 Nov;15(22):3865-74. doi: 10.1002/pmic.201500128.
45. Haplotypes of the fibrinogen gene and cerebral small vessel disease: the Rotterdam scan study. van Oijen M, etal., J Neurol Neurosurg Psychiatry. 2008 Jul;79(7):799-803. Epub 2007 Oct 19.
46. Uncovering the protective mechanism of Huoxue Anxin Recipe against coronary heart disease by network analysis and experimental validation. Wang J, etal., Biomed Pharmacother. 2020 Jan;121:109655. doi: 10.1016/j.biopha.2019.109655. Epub 2019 Nov 14.
47. Proteomics of microparticles after experimental pulmonary embolism. Watts JA, etal., Thromb Res. 2011 Oct 17.
48. Interleukin 1beta inhibits interleukin 6-mediated rat gamma fibrinogen gene expression. Zhang Z and Fuller GM, Blood 2000 Nov 15;96(10):3466-72.
49. A novel fibrinogen mutation (gamma Thr277Arg) causes hereditary hypofibrinogenemia in a Chinese family. Zhu L, etal., Blood Coagul Fibrinolysis. 2013 Sep;24(6):642-4. doi: 10.1097/MBC.0b013e32835facdc.
50. Novel mutations (gammaTrp208Leu and gammaLys232Thr) leading to congenital hypofibrinogenemia in two unrelated Chinese families. Zhu L, etal., Blood Coagul Fibrinolysis. 2014 Dec;25(8):894-7. doi: 10.1097/MBC.0000000000000156.
Additional References at PubMed
PMID:6281794   PMID:6451630   PMID:6777381   PMID:7822297   PMID:8100742   PMID:8470043   PMID:8910396   PMID:10903502   PMID:11001902   PMID:12477932   PMID:12706644   PMID:15489334  
PMID:15739255   PMID:15914557   PMID:16452087   PMID:16502470   PMID:16846481   PMID:18676163   PMID:19056867   PMID:19193866   PMID:22206666   PMID:22516433   PMID:23376485   PMID:23533145  
PMID:24414074  


Genomics

Comparative Map Data
Fgg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82170,652,929 - 170,660,372 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2170,652,234 - 170,661,170 (+)EnsemblGRCr8
mRatBN7.22168,354,880 - 168,362,325 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2168,355,013 - 168,362,322 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2175,545,169 - 175,552,469 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02173,566,102 - 173,573,404 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02168,167,520 - 168,174,818 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02181,987,080 - 181,994,523 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2181,987,217 - 181,994,514 (+)Ensemblrn6Rnor6.0
Rnor_5.02201,401,700 - 201,409,143 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42174,727,312 - 174,734,594 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2162,381,731 - 162,389,018 (+)NCBICelera
RGSC_v3.12174,677,417 - 174,684,698 (+)NCBI
Cytogenetic Map2q34NCBI
FGG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384154,604,136 - 154,612,656 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4154,604,134 - 154,612,967 (-)Ensemblhg38GRCh38
GRCh374155,525,288 - 155,533,808 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364155,744,736 - 155,753,352 (-)NCBIBuild 36Build 36hg18NCBI36
Build 344155,883,339 - 155,891,408NCBI
Celera4152,856,249 - 152,864,865 (-)NCBICelera
Cytogenetic Map4q32.1NCBI
HuRef4151,265,862 - 151,274,478 (-)NCBIHuRef
CHM1_14155,503,216 - 155,511,832 (-)NCBICHM1_1
T2T-CHM13v2.04157,935,943 - 157,944,463 (-)NCBIT2T-CHM13v2.0
Fgg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39382,915,031 - 82,922,363 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl382,915,031 - 82,922,356 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38383,007,724 - 83,015,056 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl383,007,724 - 83,015,049 (+)Ensemblmm10GRCm38
MGSCv37382,811,818 - 82,818,971 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36383,093,823 - 83,100,976 (+)NCBIMGSCv36mm8
Celera383,011,995 - 83,019,099 (+)NCBICelera
Cytogenetic Map3E3NCBI
cM Map336.94NCBI
Fgg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554718,786,910 - 8,795,013 (+)Ensembl
ChiLan1.0NW_0049554718,786,910 - 8,794,947 (+)NCBIChiLan1.0ChiLan1.0
FGG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23152,516,571 - 152,539,442 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14152,872,009 - 152,886,596 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04146,970,671 - 146,979,348 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14158,788,761 - 158,797,460 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4158,788,966 - 158,797,237 (-)EnsemblpanPan2panpan1.1
FGG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11552,261,215 - 52,270,077 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1552,261,217 - 52,269,964 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1552,605,731 - 52,614,513 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01552,948,278 - 52,957,065 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1552,948,283 - 52,957,026 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11552,203,172 - 52,211,960 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01552,307,741 - 52,316,537 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01552,622,568 - 52,631,351 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fgg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530138,194,766 - 38,203,257 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365761,343,661 - 1,352,143 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365761,343,657 - 1,352,085 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl874,553,105 - 74,563,688 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1874,553,040 - 74,562,151 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2878,850,804 - 78,859,881 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FGG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17101,148,457 - 101,157,245 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7101,148,058 - 101,157,111 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603780,803,057 - 80,811,786 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fgg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248585,827,316 - 5,838,170 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248585,828,334 - 5,836,382 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fgg
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1370,510,611 - 70,517,894 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fgg
69 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:23
Count of miRNA genes:16
Interacting mature miRNAs:21
Transcripts:ENSRNOT00000034521
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2169358774214358774Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2138595962205135428Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2124537199209621565Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2154723085199723085Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2145807215190807215Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2154723085199723085Rat
10043139Iddm55Insulin dependent diabetes mellitus QTL 553.10.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2150313808195313808Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2154723085199723085Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2159440891205135267Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2154723085199723085Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170652929215652929Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2159440891220931218Rat
12879845Cm89Cardiac mass QTL 890.008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2154723085178247591Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143565208188565208Rat
12879846Cm90Cardiac mass QTL 900.011heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)2154723085178247591Rat
12879847Am4Aortic mass QTL 40.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2154723085178247591Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2154723085199723085Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2139067258192287892Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2159440760195313808Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2144882354205135428Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
1357991Ael2Aortic elastin QTL 24.20.000071aorta elastin amount (VT:0003905)aortic elastin2169227906214227906Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2139067258184067258Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
2301415Cm67Cardiac mass QTL 670.003heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2154723085178247591Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2143746578205135428Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
11565180Kidm56Kidney mass QTL 560.003kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2154723085178247591Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150096616195096616Rat
11565181Bw176Body weight QTL 1760.002body mass (VT:0001259)body weight (CMO:0000012)2154723085178247591Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2147287892192287892Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
631520Bp73Blood pressure QTL 730.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149806826170653323Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150096616195096616Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2165453811210453811Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2163253030208253030Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat
6903312Bw112Body weight QTL 1123.20.0013body mass (VT:0001259)body weight (CMO:0000012)2145807215173074435Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat

Markers in Region
D2Mit12  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82170,656,145 - 170,656,389 (+)Marker Load Pipeline
mRatBN7.22168,358,098 - 168,358,342 (+)MAPPERmRatBN7.2
Rnor_6.02181,990,297 - 181,990,540NCBIRnor6.0
Rnor_5.02201,404,917 - 201,405,160UniSTSRnor5.0
RGSC_v3.42174,730,375 - 174,730,618UniSTSRGSC3.4
Celera2162,384,792 - 162,385,042UniSTS
RH 3.4 Map21094.5RGD
RH 3.4 Map21094.5UniSTS
FHH x ACI Map275.4999RGD
FHH x ACI Map275.4999UniSTS
Cytogenetic Map2q31-q34UniSTS
D2Wox17  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82170,656,247 - 170,656,390 (+)Marker Load Pipeline
mRatBN7.22168,358,200 - 168,358,343 (+)MAPPERmRatBN7.2
Rnor_6.02181,990,399 - 181,990,541NCBIRnor6.0
Rnor_5.02201,405,019 - 201,405,161UniSTSRnor5.0
RGSC_v3.42174,730,476 - 174,730,619RGDRGSC3.4
RGSC_v3.42174,730,477 - 174,730,619UniSTSRGSC3.4
Celera2162,384,894 - 162,385,043UniSTS
RGSC_v3.12174,680,582 - 174,680,725RGD
RH 3.4 Map21098.6UniSTS
RH 3.4 Map21098.6RGD
RH 2.0 Map2765.0RGD
Cytogenetic Map2q31-q34UniSTS
D2Wox18  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82170,653,181 - 170,653,323 (+)Marker Load Pipeline
mRatBN7.22168,355,132 - 168,355,276 (+)MAPPERmRatBN7.2
Rnor_6.02181,987,333 - 181,987,474NCBIRnor6.0
Rnor_5.02201,401,953 - 201,402,094UniSTSRnor5.0
RGSC_v3.42174,727,410 - 174,727,552RGDRGSC3.4
RGSC_v3.42174,727,411 - 174,727,552UniSTSRGSC3.4
Celera2162,381,830 - 162,381,969UniSTS
RGSC_v3.12174,677,516 - 174,677,658RGD
RH 3.4 Map21098.7UniSTS
RH 3.4 Map21098.7RGD
RH 2.0 Map2764.4RGD
Cytogenetic Map2q31-q34UniSTS
D2Arb12  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22168,358,132 - 168,358,402 (+)MAPPERmRatBN7.2
Rnor_6.02181,990,331 - 181,990,600NCBIRnor6.0
Rnor_5.02201,404,951 - 201,405,220UniSTSRnor5.0
RGSC_v3.42174,730,408 - 174,730,678RGDRGSC3.4
RGSC_v3.42174,730,409 - 174,730,678UniSTSRGSC3.4
Celera2162,384,826 - 162,385,102UniSTS
RGSC_v3.12174,680,514 - 174,680,784RGD
RH 3.4 Map21098.7UniSTS
RH 3.4 Map21098.7RGD
FHH x ACI Map275.4199UniSTS
FHH x ACI Map275.4199RGD
Cytogenetic Map2q31-q34UniSTS
RH127613  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22168,361,936 - 168,362,154 (+)MAPPERmRatBN7.2
Rnor_6.02181,994,135 - 181,994,352NCBIRnor6.0
Rnor_5.02201,408,755 - 201,408,972UniSTSRnor5.0
RGSC_v3.42174,734,213 - 174,734,430UniSTSRGSC3.4
Celera2162,388,637 - 162,388,854UniSTS
RH 3.4 Map21098.7UniSTS
Cytogenetic Map2q31-q34UniSTS
RH137153  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22168,361,582 - 168,361,791 (+)MAPPERmRatBN7.2
Rnor_6.02181,993,781 - 181,993,989NCBIRnor6.0
Rnor_5.02201,408,401 - 201,408,609UniSTSRnor5.0
RGSC_v3.42174,733,859 - 174,734,067UniSTSRGSC3.4
Celera2162,388,283 - 162,388,491UniSTS
RH 3.4 Map21097.0UniSTS
Cytogenetic Map2q31-q34UniSTS
d2mit12  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82170,656,145 - 170,656,390 (+)Marker Load Pipeline
mRatBN7.22168,358,098 - 168,358,343 (+)MAPPERmRatBN7.2
Rnor_6.02181,990,297 - 181,990,541NCBIRnor6.0
Rnor_5.02201,404,917 - 201,405,161UniSTSRnor5.0
RGSC_v3.42174,730,375 - 174,730,619UniSTSRGSC3.4
Celera2162,384,792 - 162,385,043UniSTS
Cytogenetic Map2q31-q34UniSTS


Related Rat Strains
The following Strains have been annotated to Fgg
SS.MNS-(D2Chm25-Fgg)/Ayd    


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 10 55 115 91 90 59 29 59 6 263 106 98 75 88 31 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_012559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006232525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC078893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J00733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J00734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J00735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  K01337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X05860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X05861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000034521   ⟹   ENSRNOP00000032735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2170,652,234 - 170,660,373 (+)Ensembl
mRatBN7.2 Ensembl2168,355,013 - 168,362,322 (+)Ensembl
Rnor_6.0 Ensembl2181,987,217 - 181,994,514 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115976   ⟹   ENSRNOP00000082495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2170,652,800 - 170,660,373 (+)Ensembl
mRatBN7.2 Ensembl2168,355,013 - 168,361,908 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000140167   ⟹   ENSRNOP00000100300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2170,653,052 - 170,661,170 (+)Ensembl
RefSeq Acc Id: NM_012559   ⟹   NP_036691
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82170,653,083 - 170,660,365 (+)NCBI
mRatBN7.22168,355,034 - 168,362,318 (+)NCBI
Rnor_6.02181,987,234 - 181,994,516 (+)NCBI
Rnor_5.02201,401,700 - 201,409,143 (+)NCBI
RGSC_v3.42174,727,312 - 174,734,594 (+)RGD
Celera2162,381,731 - 162,389,018 (+)RGD
Sequence:
RefSeq Acc Id: XM_006232525   ⟹   XP_006232587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82170,652,929 - 170,660,372 (+)NCBI
mRatBN7.22168,354,880 - 168,362,325 (+)NCBI
Rnor_6.02181,987,080 - 181,994,523 (+)NCBI
Rnor_5.02201,401,700 - 201,409,143 (+)NCBI
Sequence:
RefSeq Acc Id: NP_036691   ⟸   NM_012559
- Peptide Label: precursor
- UniProtKB: A6J5U7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232587   ⟸   XM_006232525
- Peptide Label: isoform X1
- UniProtKB: Q68FY3 (UniProtKB/Swiss-Prot),   P02680 (UniProtKB/Swiss-Prot),   A6J5U8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000032735   ⟸   ENSRNOT00000034521
Ensembl Acc Id: ENSRNOP00000082495   ⟸   ENSRNOT00000115976
Ensembl Acc Id: ENSRNOP00000100300   ⟸   ENSRNOT00000140167
Protein Domains
Fibrinogen C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P02680-F1-model_v2 AlphaFold P02680 1-445 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691395
Promoter ID:EPDNEW_R1920
Type:single initiation site
Name:Fgg_1
Description:fibrinogen gamma chain
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02181,987,214 - 181,987,274EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2613 AgrOrtholog
BioCyc Gene G2FUF-52663 BioCyc
Ensembl Genes ENSRNOG00000025074 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000034521.7 UniProtKB/Swiss-Prot
  ENSRNOT00000115976 ENTREZGENE
  ENSRNOT00000115976.1 UniProtKB/Swiss-Prot
  ENSRNOT00000140167 ENTREZGENE
Gene3D-CATH 1.20.5.50 UniProtKB/Swiss-Prot
  3.90.215.10 UniProtKB/Swiss-Prot
  Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7122366 IMAGE-MGC_LOAD
InterPro Fibrinogen UniProtKB/Swiss-Prot
  Fibrinogen-like_C UniProtKB/Swiss-Prot
  Fibrinogen_a/b/g_C_1 UniProtKB/Swiss-Prot
  Fibrinogen_a/b/g_C_dom UniProtKB/Swiss-Prot
  Fibrinogen_a/b/g_coil_dom UniProtKB/Swiss-Prot
  Fibrinogen_CS UniProtKB/Swiss-Prot
KEGG Report rno:24367 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93618 IMAGE-MGC_LOAD
NCBI Gene 24367 ENTREZGENE
PANTHER FIBRINOGEN ALPHA CHAIN UniProtKB/Swiss-Prot
  FIBRINOGEN ALPHA CHAIN UniProtKB/Swiss-Prot
Pfam Fib_alpha UniProtKB/Swiss-Prot
  Fibrinogen_C UniProtKB/Swiss-Prot
PhenoGen Fgg PhenoGen
PROSITE FIBRINOGEN_C_1 UniProtKB/Swiss-Prot
  FIBRINOGEN_C_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000025074 RatGTEx
SMART FBG UniProtKB/Swiss-Prot
  Fib_alpha UniProtKB/Swiss-Prot
Superfamily-SCOP Fibrinogen coiled-coil and central regions UniProtKB/Swiss-Prot
  SSF56496 UniProtKB/Swiss-Prot
TIGR TC219093
UniProt A0ABK0LJ97_RAT UniProtKB/TrEMBL
  A6J5U7 ENTREZGENE, UniProtKB/TrEMBL
  A6J5U8 ENTREZGENE, UniProtKB/TrEMBL
  FIBG_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q68FY3 ENTREZGENE
UniProt Secondary Q68FY3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-17 Fgg  fibrinogen gamma chain  Fgg  fibrinogen, gamma polypeptide  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Fgg  Fibrinogen, gamma polypeptide      Symbol and Name status set to approved 70586 APPROVED