Cela2a (chymotrypsin like elastase 2A) - Rat Genome Database

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Gene: Cela2a (chymotrypsin like elastase 2A) Rattus norvegicus
Analyze
Symbol: Cela2a
Name: chymotrypsin like elastase 2A
RGD ID: 2548
Description: Predicted to enable serine-type endopeptidase activity. Predicted to be involved in several processes, including insulin catabolic process; regulation of insulin secretion; and response to insulin. Predicted to be located in extracellular region and keratohyalin granule. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in abdominal obesity-metabolic syndrome 4. Orthologous to several human genes including CELA2A (chymotrypsin like elastase 2A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: chymotrypsin-like elastase family member 2A; chymotrypsin-like elastase family, member 2A; Ela2; Ela2a; ELAII; Elaii1; elastase 2; Elastase 2 pancreatic; Elastase 2, pancreatic; elastase 2A; elastase-2; elastase-2A
RGD Orthologs
Human
Mouse
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85159,409,900 - 159,420,282 (-)NCBIGRCr8
mRatBN7.25154,126,879 - 154,136,630 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5154,126,878 - 154,136,632 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5156,811,783 - 156,821,667 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05158,585,079 - 158,594,963 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05158,574,229 - 158,584,115 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05160,374,031 - 160,383,782 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5160,374,031 - 160,383,782 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05164,085,554 - 164,106,135 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45160,722,053 - 160,731,804 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15160,732,240 - 160,741,992 (-)NCBI
Celera5152,478,974 - 152,488,731 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Primary structure of two distinct rat pancreatic preproelastases determined by sequence analysis of the complete cloned messenger ribonucleic acid sequences. MacDonald RJ, etal., Biochemistry 1982 Mar 16;21(6):1453-63.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Molecular cloning and sequencing of the cDNA for rat mesenteric arterial bed elastase-2, an angiotensin II-forming enzyme. Santos CF, etal., J Cardiovasc Pharmacol 2002 May;39(5):628-35.
9. Structure of the two related elastase genes expressed in the rat pancreas. Swift GH, etal., J Biol Chem 1984 Nov 25;259(22):14271-8.
Additional References at PubMed
PMID:12714330   PMID:15644940   PMID:20179351   PMID:21602471   PMID:31358993  


Genomics

Comparative Map Data
Cela2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85159,409,900 - 159,420,282 (-)NCBIGRCr8
mRatBN7.25154,126,879 - 154,136,630 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5154,126,878 - 154,136,632 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5156,811,783 - 156,821,667 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05158,585,079 - 158,594,963 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05158,574,229 - 158,584,115 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05160,374,031 - 160,383,782 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5160,374,031 - 160,383,782 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05164,085,554 - 164,106,135 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45160,722,053 - 160,731,804 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15160,732,240 - 160,741,992 (-)NCBI
Celera5152,478,974 - 152,488,731 (-)NCBICelera
Cytogenetic Map5q36NCBI
CELA2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,456,732 - 15,472,091 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,456,728 - 15,472,091 (+)EnsemblGRCh38hg38GRCh38
GRCh37115,783,227 - 15,798,586 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36115,655,811 - 15,671,170 (+)NCBINCBI36Build 36hg18NCBI36
Celera114,266,097 - 14,281,458 (+)NCBICelera
Cytogenetic Map1p36.21NCBI
HuRef114,303,023 - 14,318,355 (+)NCBIHuRef
CHM1_1115,581,888 - 15,597,250 (+)NCBICHM1_1
T2T-CHM13v2.0114,901,450 - 14,916,792 (+)NCBIT2T-CHM13v2.0
Cela2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394141,542,265 - 141,553,316 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4141,542,273 - 141,553,471 (-)EnsemblGRCm39 Ensembl
GRCm384141,814,954 - 141,826,005 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4141,814,962 - 141,826,160 (-)EnsemblGRCm38mm10GRCm38
MGSCv374141,370,878 - 141,381,918 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364141,087,039 - 141,098,079 (-)NCBIMGSCv36mm8
Celera4143,639,909 - 143,650,953 (-)NCBICelera
Cytogenetic Map4D3NCBI
cM Map474.75NCBI
LOC100992916
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21211,451,372 - 211,473,090 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11210,699,826 - 210,721,553 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0114,595,218 - 14,606,322 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1115,589,914 - 15,604,924 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl115,589,878 - 15,604,926 (+)Ensemblpanpan1.1panPan2

Variants

.
Variants in Cela2a
64 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:26
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000018349
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
2302369Scl60Serum cholesterol level QTL 603.13blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)5143608201161165651Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
1300119Bp180Blood pressure QTL 1803.82arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5144358090157869054Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5151113452164465185Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
631263Cm24Cardiac mass QTL 243.5heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)5143799107158428037Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
2313096Bmd78Bone mineral density QTL 783.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)5144377876161317411Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
1298090Bp155Blood pressure QTL 1553.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)5151006154161165494Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat

Markers in Region
D5Arb14  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25154,137,169 - 154,137,426 (+)MAPPERmRatBN7.2
Rnor_6.05160,384,322 - 160,384,578NCBIRnor6.0
Rnor_5.05164,095,845 - 164,096,101UniSTSRnor5.0
RGSC_v3.45160,732,342 - 160,732,600RGDRGSC3.4
RGSC_v3.15160,742,530 - 160,742,788RGD
Celera5152,489,271 - 152,489,527UniSTS
FHH x ACI Map585.54UniSTS
FHH x ACI Map585.54RGD
Cytogenetic Map5q36UniSTS
RH142416  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25154,137,407 - 154,137,592 (+)MAPPERmRatBN7.2
Rnor_6.05160,384,560 - 160,384,744NCBIRnor6.0
Rnor_5.05164,096,083 - 164,096,267UniSTSRnor5.0
RGSC_v3.45160,732,582 - 160,732,766UniSTSRGSC3.4
Celera5152,489,509 - 152,489,693UniSTS
Cytogenetic Map5q36UniSTS
RH140695  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25154,130,449 - 154,131,766 (+)MAPPERmRatBN7.2
Rnor_6.05160,377,602 - 160,378,918NCBIRnor6.0
Rnor_5.05164,089,125 - 164,090,441UniSTSRnor5.0
RGSC_v3.45160,725,624 - 160,726,940UniSTSRGSC3.4
Celera5152,482,551 - 152,483,867UniSTS
RH 3.4 Map51057.3UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 18 62 80 79 48 25 48 4 141 62 44 14 54 31

Sequence


Ensembl Acc Id: ENSRNOT00000018349   ⟹   ENSRNOP00000018349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5154,126,878 - 154,136,632 (-)Ensembl
Rnor_6.0 Ensembl5160,374,031 - 160,383,782 (-)Ensembl
RefSeq Acc Id: NM_012553   ⟹   NP_036685
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,409,900 - 159,419,651 (-)NCBI
mRatBN7.25154,126,879 - 154,136,630 (-)NCBI
Rnor_6.05160,374,031 - 160,383,782 (-)NCBI
Rnor_5.05164,085,554 - 164,106,135 (-)NCBI
RGSC_v3.45160,722,053 - 160,731,804 (-)RGD
Celera5152,478,974 - 152,488,731 (-)RGD
Sequence:
RefSeq Acc Id: XM_063287152   ⟹   XP_063143222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85159,410,811 - 159,420,282 (-)NCBI
Protein Sequences
Protein RefSeqs NP_036685 (Get FASTA)   NCBI Sequence Viewer  
  XP_063143222 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA98780 (Get FASTA)   NCBI Sequence Viewer  
  CAA24543 (Get FASTA)   NCBI Sequence Viewer  
  EDL81019 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018349.3
  ENSRNOP00055033790
  ENSRNOP00060029147
  ENSRNOP00065037703
GenBank Protein P00774 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036685   ⟸   NM_012553
- Peptide Label: precursor
- UniProtKB: P00774 (UniProtKB/Swiss-Prot),   A6ITW9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000018349   ⟸   ENSRNOT00000018349
RefSeq Acc Id: XP_063143222   ⟸   XM_063287152
- Peptide Label: isoform X1
Protein Domains
Peptidase S1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P00774-F1-model_v2 AlphaFold P00774 1-271 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694235
Promoter ID:EPDNEW_R4760
Type:single initiation site
Name:Cela2a_1
Description:chymotrypsin-like elastase family, member 2A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05160,383,784 - 160,383,844EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2548 AgrOrtholog
BioCyc Gene G2FUF-39330 BioCyc
Ensembl Genes ENSRNOG00000013628 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055024186 UniProtKB/Swiss-Prot
  ENSRNOG00060020472 UniProtKB/Swiss-Prot
  ENSRNOG00065026609 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000018349.5 UniProtKB/Swiss-Prot
  ENSRNOT00055041533 UniProtKB/Swiss-Prot
  ENSRNOT00060035460 UniProtKB/Swiss-Prot
  ENSRNOT00065045943 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Peptidase_S1_Elastase_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_S1_PA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_S1A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24332 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 24332 ENTREZGENE
PANTHER CHYMOTRYPSIN-LIKE ELASTASE FAMILY MEMBER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CHYMOTRYPSIN-LIKE ELASTASE FAMILY MEMBER 2B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Trypsin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cela2a PhenoGen
PRINTS CHYMOTRYPSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
  TRYPSIN_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013628 RatGTEx
  ENSRNOG00055024186 RatGTEx
  ENSRNOG00060020472 RatGTEx
  ENSRNOG00065026609 RatGTEx
SMART Tryp_SPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50494 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6ITW9 ENTREZGENE, UniProtKB/TrEMBL
  CEL2A_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Cela2a  chymotrypsin like elastase 2A  Cela2a  chymotrypsin-like elastase family, member 2A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-05-18 Cela2a  chymotrypsin-like elastase family, member 2A  Ela2a  elastase 2A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-15 Ela2a  elastase 2A  Ela2  elastase 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-11-06 Ela2  elastase 2    Elastase 2, pancreatic  Name updated 625702 APPROVED
2002-06-10 Ela2  Elastase 2, pancreatic      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference