Ctf1 (cardiotrophin 1) - Rat Genome Database

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Gene: Ctf1 (cardiotrophin 1) Rattus norvegicus
Analyze
Symbol: Ctf1
Name: cardiotrophin 1
RGD ID: 2442
Description: Enables cytokine activity and leukemia inhibitory factor receptor binding activity. Involved in leukemia inhibitory factor signaling pathway and nervous system development. Predicted to be located in extracellular space. Predicted to be active in extracellular region. Biomarker of hypertension and hypertrophic cardiomyopathy. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human CTF1 (cardiotrophin 1); PARTICIPATES IN cytokine mediated signaling pathway; Jak-Stat signaling pathway; INTERACTS WITH (+)-pilocarpine; (+)-schisandrin B; 1,2,4-trimethylbenzene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cardiotrophin-1; CT-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,758,512 - 191,771,259 (+)NCBIGRCr8
mRatBN7.21182,328,035 - 182,336,346 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,328,090 - 182,333,335 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,678,674 - 190,683,883 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01197,864,766 - 197,869,976 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01190,535,271 - 190,540,479 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01199,162,319 - 199,168,296 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,163,086 - 199,168,296 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,186,511 - 206,191,930 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,001,445 - 187,006,655 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11187,151,325 - 187,156,536 (+)NCBI
Celera1179,979,246 - 179,984,456 (+)NCBICelera
Cytogenetic Map1q37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The cytoprotective effects of the glycoprotein 130 receptor-coupled cytokine, cardiotrophin-1, require activation of NF-kappa B. Craig R, etal., J Biol Chem 2001 Oct 5;276(40):37621-9.
2. Genetic variants in the promoter (g983G>T) and coding region (A92T) of the human cardiotrophin-1 gene (CTF1) in patients with dilated cardiomyopathy. Erdmann J, etal., Hum Mutat. 2000 Nov;16(5):448.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. cDNA cloning of rat cardiotrophin-1 (CT-1): augmented expression of CT-1 gene in ventricle of genetically hypertensive rats. Ishikawa M, etal., Biochem Biophys Res Commun 1996 Feb 15;219(2):377-81.
5. Is plasma cardiotrophin-1 a marker of hypertensive heart disease? Lopez B, etal., J Hypertens. 2005 Mar;23(3):625-32.
6. Development of cardiac hypertrophy by sunitinib in vivo and in vitro rat cardiomyocytes is influenced by the aryl hydrocarbon receptor signaling pathway. Maayah ZH, etal., Arch Toxicol. 2014 Mar;88(3):725-38. doi: 10.1007/s00204-013-1159-5. Epub 2013 Nov 19.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Comparison of the effects of HGF, BDNF, CT-1, CNTF, and the branchial arches on the growth of embryonic cranial motor neurons. Naeem A, etal., J Neurobiol 2002 May;51(2):101-14.
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. Cardiotrophin-1 and urocortin cause protection by the same pathway and hypertrophy via distinct pathways in cardiac myocytes. Railson JE, etal., Cytokine 2002 Mar 7;17(5):243-53.
12. GOA pipeline RGD automated data pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
16. Hypertrophic responses to cardiotrophin-1 are not mediated by STAT3, but via a MEK5-ERK5 pathway in cultured cardiomyocytes. Takahashi N, etal., J Mol Cell Cardiol. 2005 Jan;38(1):185-92. Epub 2004 Dec 10.
17. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
Additional References at PubMed
PMID:14674704   PMID:15489334   PMID:15659589   PMID:15716414   PMID:19327894   PMID:20216087   PMID:21279379   PMID:21912637   PMID:21926338   PMID:22733458   PMID:22787135   PMID:23064267  
PMID:23277190  


Genomics

Comparative Map Data
Ctf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,758,512 - 191,771,259 (+)NCBIGRCr8
mRatBN7.21182,328,035 - 182,336,346 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,328,090 - 182,333,335 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,678,674 - 190,683,883 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01197,864,766 - 197,869,976 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01190,535,271 - 190,540,479 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01199,162,319 - 199,168,296 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1199,163,086 - 199,168,296 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01206,186,511 - 206,191,930 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41187,001,445 - 187,006,655 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11187,151,325 - 187,156,536 (+)NCBI
Celera1179,979,246 - 179,984,456 (+)NCBICelera
Cytogenetic Map1q37NCBI
CTF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,895,846 - 30,903,560 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,896,614 - 30,903,547 (+)EnsemblGRCh38hg38GRCh38
GRCh371630,907,935 - 30,914,881 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,815,429 - 30,822,382 (+)NCBINCBI36Build 36hg18NCBI36
Build 341630,815,428 - 30,822,381NCBI
Celera1629,382,737 - 29,389,814 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,470,690 - 28,477,682 (+)NCBIHuRef
CHM1_11632,225,018 - 32,231,972 (+)NCBICHM1_1
T2T-CHM13v2.01631,283,287 - 31,291,024 (+)NCBIT2T-CHM13v2.0
Ctf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,311,872 - 127,317,360 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,311,908 - 127,317,364 (+)EnsemblGRCm39 Ensembl
GRCm387127,712,676 - 127,718,188 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,712,736 - 127,718,192 (+)EnsemblGRCm38mm10GRCm38
MGSCv377134,856,250 - 134,861,699 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367127,503,884 - 127,509,333 (+)NCBIMGSCv36mm8
Celera7127,551,798 - 127,557,251 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.69NCBI
Ctf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554937,735,996 - 7,737,559 (+)NCBIChiLan1.0ChiLan1.0
CTF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21834,101,941 - 34,109,044 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11638,903,404 - 38,910,508 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01624,065,866 - 24,072,973 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11631,263,009 - 31,269,439 (+)NCBIpanpan1.1PanPan1.1panPan2
CTF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,299,561 - 17,303,095 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,299,561 - 17,303,095 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha618,874,611 - 18,878,145 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0617,427,691 - 17,433,408 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl617,406,389 - 17,433,403 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,230,218 - 17,233,760 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,149,372 - 17,152,903 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,461,913 - 17,465,457 (-)NCBIUU_Cfam_GSD_1.0
Ctf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344125,188,961 - 125,193,420 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493650113,286,821 - 13,291,280 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,539,941 - 17,544,396 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,539,927 - 17,545,250 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,955,024 - 17,960,632 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103231119
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,579,175 - 27,586,779 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl527,579,987 - 27,585,759 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660681,878,594 - 1,886,866 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ctf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478213,976,308 - 13,979,327 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ctf1
29 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:83
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000025646
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1354652Kidm20Kidney mass QTL 204.3kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1177227632256448636Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1354653Despr9Despair related QTL 90.00019locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1167909849212909849Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
2293673Bss27Bone structure and strength QTL 2718.630.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)1171629477216629477Rat
2293677Bss41Bone structure and strength QTL 419.380.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1171629477216629477Rat
1302787Stl25Serum triglyceride level QTL 252.70.0073blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)1180359209210702199Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
1549830Bss1Bone structure and strength QTL 14.8femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)1172609619217609619Rat
70163Bw20Body weight QTL 205.1body mass (VT:0001259)body weight (CMO:0000012)1174133260219133260Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
1578763Kidm29Kidney mass QTL 293.30.0001kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1179567751260522016Rat
1354624Cm35Cardiac mass QTL355.7heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1177227632256448636Rat
1558658Bw59Body weight QTL 593.50.0003body mass (VT:0001259)body weight (CMO:0000012)1178784622223784622Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1151162512201278233Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
2293689Bss47Bone structure and strength QTL 477.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)1171629477216629477Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
61341Bp26Blood pressure QTL 26arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1169537671214537671Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1151162512201278233Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1155866514200866514Rat
2293693Bss22Bone structure and strength QTL 2233.520.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1171629477216629477Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1151646613196646613Rat
2300161Bmd43Bone mineral density QTL 438.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
61347Bp197Blood pressure QTL 1974.2arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1158633083203633083Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144017057197814409Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1154561505199561505Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
631214Bw61Body weight QTL613.40.0001intramuscular adipose amount (VT:0010044)intramuscular fat area (CMO:0001162)1173108781218108781Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
2300174Bmd42Bone mineral density QTL 428.40.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)1171629477216629477Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1181133855226133855Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
2293654Bss30Bone structure and strength QTL 3032.650.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1171629477216629477Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
2300187Bmd41Bone mineral density QTL 418.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1171629477216629477Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1123350408182418476Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
1354580Scort1Serum corticosterone level QTL 13.4blood corticosterone amount (VT:0005345)blood corticosterone level (CMO:0001172)1156677124256448636Rat
1358294Bw37Body weight QTL 3750.000011body mass (VT:0001259)body weight (CMO:0000012)1171310381216310381Rat
61378Bp43Blood pressure QTL 4322.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1181746937196383668Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
724559Pancm1Pancreatic morphology QTL 17.1islet of Langerhans morphology trait (VT:0005215)pancreatic islet damage composite score (CMO:0001156)1181759564214537555Rat
2312420Pur17Proteinuria QTL 177.10.0001urine protein amount (VT:0005160)urine total protein excretion rate (CMO:0000756)1156677124218753816Rat
10059600Bp378Blood pressure QTL 3783.080.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1176869060221869060Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
2312558Glom17Glomerulus QTL 173.90.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)1166532971191278129Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
619613Bp77Blood pressure QTL 770.01arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1164747424209747424Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
619614Bp78Blood pressure QTL 780.001arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1169112897197261052Rat
634321Hc1Hypercalciuria QTL 12.91urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1178810256240830002Rat
724562Rends1Renal damage susceptibility QTL 10.05kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)1169537671214537671Rat
2292222Bp307Blood pressure QTL 3073.060.0014arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393213533942Rat
2292220Bp306Blood pressure QTL 3063.470.00087arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1164310393243914901Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1600380Niddm70Non-insulin dependent diabetes mellitus QTL 703.10.0008blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)1176550523221550523Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512201278233Rat
1354618Kidm15Kidney mass QTL 155kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)1156677124201278233Rat
6903303Scl34Serum cholesterol QTL 342.50.0033blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)1180359209218108781Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1123350408182418476Rat
2293083Iddm25Insulin dependent diabetes mellitus QTL 254.18blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1181829673224569684Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
738032Hcas5Hepatocarcinoma susceptibility QTL 53.12liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1176426412257976495Rat
2325725Eae31Experimental allergic encephalomyelitis QTL 31nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1178810256188377506Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1151162512201278233Rat
631670Iddm10Insulin dependent diabetes mellitus QTL 101.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1174133260196383668Rat

Markers in Region
RH133519  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21182,332,974 - 182,333,193 (+)MAPPERmRatBN7.2
Rnor_6.01199,167,936 - 199,168,154NCBIRnor6.0
Rnor_5.01206,191,567 - 206,191,785UniSTSRnor5.0
RGSC_v3.41187,006,295 - 187,006,513UniSTSRGSC3.4
Celera1179,984,096 - 179,984,314UniSTS
Cytogenetic Map1q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 2 2 2 27 25 1
Low 2 43 55 39 19 39 8 11 74 8 16 10 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_017129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006230221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039103137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC111812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D78591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000025646   ⟹   ENSRNOP00000025646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1182,328,784 - 182,333,335 (+)Ensembl
Rnor_6.0 Ensembl1199,163,086 - 199,168,296 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103205   ⟹   ENSRNOP00000089496
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1182,328,090 - 182,333,335 (+)Ensembl
RefSeq Acc Id: NM_017129   ⟹   NP_058825
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81191,758,602 - 191,763,812 (+)NCBI
mRatBN7.21182,328,125 - 182,333,335 (+)NCBI
Rnor_6.01199,163,086 - 199,168,296 (+)NCBI
Rnor_5.01206,186,511 - 206,191,930 (+)NCBI
RGSC_v3.41187,001,445 - 187,006,655 (+)RGD
Celera1179,979,246 - 179,984,456 (+)RGD
Sequence:
RefSeq Acc Id: XM_006230221   ⟹   XP_006230283
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81191,758,580 - 191,763,815 (+)NCBI
mRatBN7.21182,328,106 - 182,333,338 (+)NCBI
Rnor_6.01199,162,319 - 199,168,296 (+)NCBI
Rnor_5.01206,186,511 - 206,191,930 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103132   ⟹   XP_038959060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81191,758,512 - 191,771,259 (+)NCBI
mRatBN7.21182,328,035 - 182,336,332 (+)NCBI
RefSeq Acc Id: XM_039103137   ⟹   XP_038959065
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81191,758,512 - 191,771,259 (+)NCBI
mRatBN7.21182,328,035 - 182,336,346 (+)NCBI
RefSeq Acc Id: XM_063282760   ⟹   XP_063138830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81191,758,573 - 191,771,259 (+)NCBI
RefSeq Acc Id: XM_063282761   ⟹   XP_063138831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81191,758,750 - 191,771,259 (+)NCBI
RefSeq Acc Id: XM_063282762   ⟹   XP_063138832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81191,758,785 - 191,771,259 (+)NCBI
RefSeq Acc Id: XM_063282763   ⟹   XP_063138833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81191,758,752 - 191,763,815 (+)NCBI
RefSeq Acc Id: XM_063282764   ⟹   XP_063138834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81191,758,512 - 191,769,976 (+)NCBI
RefSeq Acc Id: NP_058825   ⟸   NM_017129
- UniProtKB: Q63086 (UniProtKB/Swiss-Prot),   A6I9T6 (UniProtKB/TrEMBL),   A0A8L2UK35 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006230283   ⟸   XM_006230221
- Peptide Label: isoform X6
- UniProtKB: A0A8L2UK35 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000025646   ⟸   ENSRNOT00000025646
RefSeq Acc Id: XP_038959065   ⟸   XM_039103137
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038959060   ⟸   XM_039103132
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000089496   ⟸   ENSRNOT00000103205
RefSeq Acc Id: XP_063138834   ⟸   XM_063282764
- Peptide Label: isoform X8
- UniProtKB: A0A8L2UK35 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138830   ⟸   XM_063282760
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063138831   ⟸   XM_063282761
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063138833   ⟸   XM_063282763
- Peptide Label: isoform X7
- UniProtKB: A0A8L2UK35 (UniProtKB/TrEMBL),   A0A8I6ABW6 (UniProtKB/TrEMBL),   A6I9T7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138832   ⟸   XM_063282762
- Peptide Label: isoform X5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63086-F1-model_v2 AlphaFold Q63086 1-203 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690439
Promoter ID:EPDNEW_R964
Type:initiation region
Name:Ctf1_1
Description:cardiotrophin 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01199,163,109 - 199,163,169EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2442 AgrOrtholog
BioCyc Gene G2FUF-57344 BioCyc
Ensembl Genes ENSRNOG00000018962 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025646.3 UniProtKB/TrEMBL
  ENSRNOT00000103205.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7096800 IMAGE-MGC_LOAD
InterPro 4_helix_cytokine-like_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Leukemia_IF/oncostatin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRF/CT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29201 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:91750 IMAGE-MGC_LOAD
NCBI Gene 29201 ENTREZGENE
PANTHER CARDIOTROPHIN-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21353 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LIF_OSM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ctf1 PhenoGen
RatGTEx ENSRNOG00000018962 RatGTEx
Superfamily-SCOP SSF47266 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC219295
UniProt A0A8I6ABW6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2UK35 ENTREZGENE, UniProtKB/TrEMBL
  A6I9T6 ENTREZGENE, UniProtKB/TrEMBL
  A6I9T7 ENTREZGENE, UniProtKB/TrEMBL
  CTF1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Ctf1  cardiotrophin 1      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_pathway acts via the signal transducer and activator of transcription 3 (STAT3) pathway 727670
gene_process promotes the outgrowth of embryonic cranial motor neurons 727568
gene_product member of the interleukin-6 family of cytokines 727670