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Gene: Chgb (chromogranin B) Rattus norvegicus

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Symbol:

Chgb

Name:

chromogranin B

RGD ID:

2339

Description:

Located in secretory granule. Orthologous to human CHGB (chromogranin B); INTERACTS WITH (S)-nicotine; 17beta-estradiol 3-benzoate; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cgB; chromogranin B (secretogranin 1); Chromogranin B parathyroid secretory protein; Chromogranin B, parathyroid secretory protein; chromogranin-B; glucagonoma peptide; MGC156676; secretogranin-1; secretogranin-I; sgI

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CHGB (chromogranin B)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Chgb (chromogranin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Chgb (chromogranin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CHGB (chromogranin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CHGB (chromogranin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Chgb (chromogranin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CHGB (chromogranin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CHGB (chromogranin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Chgb (chromogranin B)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Chgb (chromogranin B)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CHGB (chromogranin B)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	chgb (chromogranin B)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	chgb (chromogranin B)	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	chgb	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	140,496,712 - 140,510,057 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	140,495,951 - 140,510,054 (+)	Ensembl				GRCr8
mRatBN7.2	3	120,043,824 - 120,057,169 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	120,043,738 - 120,057,166 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	123,938,946 - 123,952,295 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	132,542,607 - 132,555,930 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	130,195,081 - 130,208,430 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	125,428,050 - 125,441,601 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	125,428,260 - 125,441,594 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	131,912,022 - 131,925,379 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	120,571,736 - 120,584,874 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	118,829,899 - 118,843,230 (+)	NCBI		Celera
RGSC_v3.1	3	120,477,308 - 120,490,447 (+)	NCBI
RH 3.4 Map	3	1031.0	RGD
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Huntington's disease-like 1 (ISO)

Inosine Triphosphatase Deficiency (ISO)

pantothenate kinase-associated neurodegeneration (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (EXP)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-methylcholine (ISO)

6-propyl-2-thiouracil (EXP)

aldehydo-D-glucose (ISO)

amitrole (EXP)

ammonium chloride (EXP)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (EXP)

cadmium dichloride (ISO)

camptothecin (ISO)

CGP 52608 (ISO)

chlorpyrifos (EXP,ISO)

choline (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

Cuprizon (EXP)

D-glucose (ISO)

diarsenic trioxide (ISO)

diazinon (EXP)

dibutyl phthalate (EXP)

dieldrin (EXP)

diethyl phthalate (EXP)

diisobutyl phthalate (EXP)

diisononyl phthalate (EXP)

dorsomorphin (ISO)

ethanol (ISO)

flavonoids (EXP)

folic acid (ISO)

fructose (ISO)

furan (EXP)

genistein (ISO)

glucose (ISO)

kainic acid (EXP)

L-methionine (ISO)

lithium chloride (ISO)

lycopene (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

Muraglitazar (EXP)

N-ethyl-N-nitrosourea (EXP)

nickel atom (EXP)

nicotine (EXP)

Oxotremorine (EXP)

perfluorohexanesulfonic acid (ISO)

reserpine (EXP)

resveratrol (ISO)

rotenone (EXP)

S-nitrosoglutathione (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium dichromate (ISO)

sotorasib (ISO)

sulfadimethoxine (EXP)

Tesaglitazar (EXP)

thapsigargin (EXP)

titanium dioxide (ISO)

trametinib (ISO)

trichostatin A (ISO)

triclosan (ISO)

triptonide (ISO)

troglitazone (EXP)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

extracellular region (IEA)

extracellular space (IBA)

secretory granule (IBA,IDA,IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Nucleotide sequence and cellular distribution of rat chromogranin B (secretogranin I) mRNA in the neuroendocrine system.	Forss-Petter S, etal., J Mol Neurosci 1989;1(2):63-75.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence.	Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
5.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
9.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
10.	Localization of the secretory granule marker protein chromogranin B in the nucleus. Potential role in transcription control.	Yoo SH, etal., J Biol Chem 2002 May 3;277(18):16011-21.

Additional References at PubMed

PMID:1954895	PMID:11168356	PMID:12477932	PMID:12902350	PMID:15489334	PMID:18181560	PMID:18420944	PMID:18437352	PMID:24266713	PMID:25217033	PMID:31182646

Genomics

Comparative Map Data

Chgb
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	140,496,712 - 140,510,057 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	140,495,951 - 140,510,054 (+)	Ensembl				GRCr8
mRatBN7.2	3	120,043,824 - 120,057,169 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	120,043,738 - 120,057,166 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	123,938,946 - 123,952,295 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	132,542,607 - 132,555,930 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	130,195,081 - 130,208,430 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	125,428,050 - 125,441,601 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	125,428,260 - 125,441,594 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	131,912,022 - 131,925,379 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	120,571,736 - 120,584,874 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	118,829,899 - 118,843,230 (+)	NCBI		Celera
RGSC_v3.1	3	120,477,308 - 120,490,447 (+)	NCBI
RH 3.4 Map	3	1031.0	RGD
Cytogenetic Map	3	q36	NCBI

CHGB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	5,911,510 - 5,925,353 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	5,911,510 - 5,925,353 (+)	Ensembl			hg38	GRCh38
GRCh37	20	5,892,156 - 5,905,999 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	5,840,168 - 5,854,003 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	5,840,167 - 5,854,003	NCBI
Celera	20	5,963,586 - 5,977,617 (+)	NCBI		Celera
Cytogenetic Map	20	p12.3	NCBI
HuRef	20	5,848,525 - 5,862,556 (+)	NCBI		HuRef
CHM1_1	20	5,892,482 - 5,906,506 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	5,951,841 - 5,965,685 (+)	NCBI		T2T-CHM13v2.0

Chgb
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	132,623,562 - 132,636,999 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	132,623,198 - 132,636,999 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	132,781,642 - 132,795,079 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	132,781,278 - 132,795,079 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	132,607,014 - 132,620,808 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	132,472,719 - 132,486,513 (+)	NCBI		MGSCv36	mm8
Celera	2	134,008,737 - 134,022,531 (+)	NCBI		Celera
Cytogenetic Map	2	F2	NCBI
cM Map	2	64.74	NCBI

Chgb
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	16,311,621 - 16,325,019 (+)	Ensembl
ChiLan1.0	NW_004955415	16,311,769 - 16,324,962 (+)	NCBI	ChiLan1.0	ChiLan1.0

CHGB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	6,831,982 - 6,847,419 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	6,828,808 - 6,844,245 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	5,905,854 - 5,919,758 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	5,688,837 - 5,702,816 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	5,688,837 - 5,859,738 (+)	Ensembl			panPan2	panpan1.1

CHGB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	15,917,215 - 15,930,222 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	15,917,215 - 15,930,158 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	15,739,474 - 15,752,447 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	16,319,975 - 16,332,968 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	16,319,975 - 16,333,580 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	15,926,486 - 15,939,478 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	16,034,841 - 16,047,838 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	16,366,313 - 16,379,304 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Chgb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	164,694,788 - 164,708,951 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	13,126,113 - 13,140,569 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	13,126,152 - 13,140,340 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHGB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	14,746,997 - 14,761,995 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	14,747,282 - 14,761,995 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	15,866,036 - 15,870,070 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Sscrofa10.2	17	15,800,576 - 15,805,992 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CHGB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	32,210,079 - 32,224,123 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	32,209,433 - 32,224,204 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666071	12,317,185 - 12,331,403 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chgb
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	6,754,407 - 6,766,079 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624741	6,754,161 - 6,766,317 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Chgb
52 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	166
Count of miRNA genes:	120
Interacting mature miRNAs:	135
Transcripts:	ENSRNOT00000028892
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	84091273	129091273	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
1358204	Insglur1	Insulin/glucose ratio QTL 1	3.8		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	3	115638168	135181505	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	112287552	135181505	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat

Markers in Region

RH94437

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	120,056,966 - 120,057,144 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	125,441,399 - 125,441,576	NCBI	Rnor6.0
Rnor_5.0	3	131,925,177 - 131,925,354	UniSTS	Rnor5.0
RGSC_v3.4	3	120,584,675 - 120,584,852	UniSTS	RGSC3.4
Celera	3	118,843,028 - 118,843,205	UniSTS
RH 3.4 Map	3	1031.0	UniSTS
Cytogenetic Map	3	q36	UniSTS

UniSTS:141336

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	120,056,958 - 120,057,123 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	125,441,391 - 125,441,555	NCBI	Rnor6.0
Rnor_5.0	3	131,925,169 - 131,925,333	UniSTS	Rnor5.0
RGSC_v3.4	3	120,584,667 - 120,584,831	UniSTS	RGSC3.4
Celera	3	118,843,020 - 118,843,184	UniSTS
Cytogenetic Map	3	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	47	161	74	72	42	54	42	5	258	133	10	140	59	90	30	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_012526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF019974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB705583	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000028892 ⟹ ENSRNOP00000028892

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	140,496,755 - 140,510,050 (+)	Ensembl
mRatBN7.2 Ensembl	3	120,043,824 - 120,057,162 (+)	Ensembl
Rnor_6.0 Ensembl	3	125,428,260 - 125,441,594 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094256 ⟹ ENSRNOP00000087656

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	140,507,038 - 140,510,054 (+)	Ensembl
mRatBN7.2 Ensembl	3	120,044,143 - 120,057,166 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106886 ⟹ ENSRNOP00000097178

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	140,495,951 - 140,510,054 (+)	Ensembl
mRatBN7.2 Ensembl	3	120,043,738 - 120,057,166 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000148554 ⟹ ENSRNOP00000104738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	140,496,451 - 140,510,050 (+)	Ensembl

RefSeq Acc Id:

NM_012526 ⟹ NP_036658

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	140,496,712 - 140,510,057 (+)	NCBI
mRatBN7.2	3	120,043,824 - 120,057,169 (+)	NCBI
Rnor_6.0	3	125,428,260 - 125,441,601 (+)	NCBI
Rnor_5.0	3	131,912,022 - 131,925,379 (+)	NCBI
RGSC_v3.4	3	120,571,736 - 120,584,874 (+)	RGD
Celera	3	118,829,899 - 118,843,230 (+)	NCBI

Sequence:

show sequence

GGCGTCCCCACATCCCTGCCTGTGCCTGCTGGGACCCTGCGCAAGGCCACGCGCACTGGCTGAG
GTACCGCCCGCTGGCGCCGCCTCGGGGCTGCTCCGTGACGTCAGGGCTGAGCGAGGGGCGCCCC
CGCCCGCCGCTCGCCCCCGGGCTCTGCACCCCGCCTGCCCTTCATAAGAGCCAGGCCTGCGCCC
ACCGCGCCACAGCTGCTCTGCGGAGCCCGCACCCGCCGAGCTCCTCCTACATGCAGCTGGCGAG
CGGCACCATGCAGCGGGCCATGCTCCTCGGCCTCCTGGGCGCAGCAGCTCTGGCTGCTGTCATC
TCAGCTCCAGTGGATAACAGGGATCACAATGAAGAAATGGTGACTCGCTGCATTATTGAAGTCC
TCTCAAATGCCCTATCCAAGTCCAGTGCTCCAACCATCACCCCTGAGTGCCGGCAAGTCCTGAG
GAAGAGTGGAAAAGAGGTCAAAGGTGAAGAGAAAGGTGAAAATGAGAACTCGAAGTTTGAAGTA
CGGTTGCTAAGAGACCCATCTGATGCCTCAGTAGGCCGCTGGGCCTCCAGTAGGGAGGAAACAG
GGGCTCCAGTAGAAGACTCTCCAGGTCAGGCGAAGGTAGACAATGAGGAGTGGACAGGAGGAGG
AGGACACAGTCGAGAGGCAGTAGATGACCAGGAGAGCCTCCATCCCTCCAACCAACAAGTGTCC
AAAGAAGCAAAGATACGCCATTCGGAGGAGAGGGGCGGAAAAGAGGAGGAGGAGGAAGAAGGCA
AGATTTATCCAAAGGGAGAGCATAGGGGAGATGCTGGTGAGGAGAAGAAACACACTGAAGAATC
TGGAGAGAAACACAACGCCTTCTCCAACAAAAGAAGCGAAGCTTCAGCTAAGAAAAAAGAGGAG
TCAGTGGCCAGAGCAGAGGCACACTTCGTGGAGCTGGAGAAGACACACAGCAGGGAGCAGAGCA
GCCAGGAGAGTGGAGAGGAGACGAGGAGGCAGGAGAAACCACAGGAGCTTCCCGACCAGGACCA
GAGCGAGGAAGAATCCGAGGAAGGCGAGGAAGGCGAGGAAGGCGCAACCTCAGAAGTAACCAAA
CGCAGGCCCAGGCACCACCACTGGAGAAGCCAGTCCAACAAGCCCTCTTACGAAGGGCGTCGTC
CTCTGTCTGAGGAAAGGAAACATGCTGCTGGGGAGTCCAAGGATGCAAATGTGGCCACAGCCAA
TTTAGGGGAAAAAAGGGGCCACCACCTAGCTCACTACCGGGCTTCAGAGGAAGAACCTGACTAT
GGGGAAGAATTGAGAAGCTATCCGGGCTTCCAGGCTCCCCAGGGACTGCAGTACCAGGGCAGAG
GAAGTGAAGAGGTCAGAGCCCCAAGCCCTCGGAGTGAGGAGAGCCAGGAAAAGGAGTACAAGAG
AAACCACCCCGACTCTGAACTGGAAAGCACAGCAAACAGACACAGTGAAGAAACTGAGGAAGAG
AGGAGCTACGAGGGGGCAAAGGGACGACAACACAGAGGCAGGGGGCGGGAGCCAGGAGCTTATC
CTGCTCTTGACAGCAGACAAGAAAAAAGGCTCCTGGATGAAGGGCATGACCCTGTTCATGAAAG
CCCAGTAGATACGGCAAAAAGGTATCCACAAAGCAAATGGCAGGAACAGGAGAAAAACTACCTC
AACTATGACGAGGAAGGGGACCAAGGAAGATGGTGGCAGCAGGAAGAGCAGCTAGAACCGGAAG
AAAGCAGGGAGGAAGTGAGCTTTCCAGACAGACAATACGCGCCCTACCCCACCACTGAAAAGAG
GAAGAGGCTAGGGGCGCTGTTCAACCCGTACTTTGACCCTCTCCAGTGGAAGAATAGCGACTTT
GAGAAAAAAGGCAACCCAGATGACAGTTTCCTTGATGATGACGGCGAAGACGGAAATGGGGTGA
CAATGACTGAGAAGAATTTCTTCCCAGAGTACAACTATGACTGGTGGGAGAAAAGGCCCTTCTC
GGAGGATGTGAATTGGGGATATGAGAAGAGAAGCTTTGCCAGGGCCCCTCACTTGGACTTGAAA
AGGCAATACGACGATGGAGTGGCTGAACTGGACCAGCTCCTTCACTACAGGAAGAAGGCAGCCG
AATTTCCCGACTTCTACGATTCAGAGGAGCAGATGGGGCCTCACCAGGAGGCAGAAGATGAAAA
GGACAGGGCTGACCAGAGAGTTCTGACCGAGGAAGAGAAAAAGGAACTGGAGAACTTGGCGGCC
ATGGATCTGGAACTGCAGAAAATAGCGGAAAAGTTCAGCCAGCGGGGCTGACAGTCGGAGAGAC
GAGCCATTCGCTGAAAGACAGCATTGATTCACCCAAAGGCAGAAAGCAGAATTTACTATTTATT
AAATGTTTGATGCAGTTGGAAATATCACTAATCTTTGCCAGAATGCTAATGCTATGCGACTAGC
GTGACTTGTAGCATATTCTTCCTGCAAAATAGATGTTCCACATGTCTGTGACAATGACCGTGTT
ACTGTCTTTGAAACACAAACAATAAAAGATTTACCTGAAACAAAAAAAAAAAAAAAAAAAAAAA
AAAA

hide sequence

RefSeq Acc Id:

XM_006235072 ⟹ XP_006235134

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	140,496,804 - 140,510,057 (+)	NCBI
mRatBN7.2	3	120,043,846 - 120,057,169 (+)	NCBI
Rnor_6.0	3	125,428,050 - 125,441,601 (+)	NCBI
Rnor_5.0	3	131,912,022 - 131,925,379 (+)	NCBI

Sequence:

show sequence

GTCTAAGAACCGCCCGTGTATTTATTCCAAGCAAGGATCTTCCTCAGCTTGGCAGAAGAAAAAT
CAAGCTGACCCTATCATTTACGCACAAGTATCCCACAGCCTCAAACTGGCATCTGCAGGCTCGG
AGATGTGGCGGAGTTGCTGGAGCGCAGGCGCGGCAGCATGAGCTGGACCCTTGCCCCCCCTTGC
CTGAGATCCACAGCACCTGGCGTCCCCACATCCCTGCCTGTGCCTGCTGGGACCCTGCGCAAGG
CCACGCGCACTGGCTGAGGTACCGCCCGCTGGCGCCGCCTCGGGGCTGCTCCGTGACGTCAGGG
CTGAGCGAGGGGCGCCCCCGCCCGCCGCTCGCCCCCGGGCTCTGCACCCCGCCTGCCCTTCATA
AGAGCCAGGCCTGCGCCCACCGCGCCACAGCTGCTCTGCGGAGCCCGCACCCGCCGAGCTCCTC
CTACATGCAGCTGGCGAGCGGCACCATGCAGCGGGCCATGCTCCTCGGCCTCCTGGGCGCAGCA
GCTCTGGCTGAGCTTTTTGAAAGGACATCCACAACCATCTGTGCTGTCATCTCAGCTCCAGTGG
ATAACAGGGATCACAATGAAGAAATGGTGACTCGCTGCATTATTGAAGTCCTCTCAAATGCCCT
ATCCAAGTCCAGTGCTCCAACCATCACCCCTGAGTGCCGGCAAGTCCTGAGGAAGAGTGGAAAA
GAGGTCAAAGGTGAAGAGAAAGGTGAAAATGAGAACTCGAAGTTTGAAGTACGGTTGCTAAGAG
ACCCATCTGATGCCTCAGTAGGCCGCTGGGCCTCCAGTAGGGAGGAAACAGGGGCTCCAGTAGA
AGACTCTCCAGGTCAGGCGAAGGTAGACAATGAGGAGTGGACAGGAGGAGGAGGACACAGTCGA
GAGGCAGTAGATGACCAGGAGAGCCTCCATCCCTCCAACCAACAAGTGTCCAAAGAAGCAAAGA
TACGCCATTCGGAGGAGAGGGGCGGAAAAGAGGAGGAGGAGGAAGAAGGCAAGATTTATCCAAA
GGGAGAGCATAGGGGAGATGCTGGTGAGGAGAAGAAACACACTGAAGAATCTGGAGAGAAACAC
AACGCCTTCTCCAACAAAAGAAGCGAAGCTTCAGCTAAGAAAAAAGAGGAGTCAGTGGCCAGAG
CAGAGGCACACTTCGTGGAGCTGGAGAAGACACACAGCAGGGAGCAGAGCAGCCAGGAGAGTGG
AGAGGAGACGAGGAGGCAGGAGAAACCACAGGAGCTTCCCGACCAGGACCAGAGCGAGGAAGAA
TCCGAGGAAGGCGAGGAAGGCGAGGAAGGCGCAACCTCAGAAGTAACCAAACGCAGGCCCAGGC
ACCACCACTGGAGAAGCCAGTCCAACAAGCCCTCTTACGAAGGGCGTCGTCCTCTGTCTGAGGA
AAGGAAACATGCTGCTGGGGAGTCCAAGGATGCAAATGTGGCCACAGCCAATTTAGGGGAAAAA
AGGGGCCACCACCTAGCTCACTACCGGGCTTCAGAGGAAGAACCTGACTATGGGGAAGAATTGA
GAAGCTATCCGGGCTTCCAGGCTCCCCAGGGACTGCAGTACCAGGGCAGAGGAAGTGAAGAGGT
CAGAGCCCCAAGCCCTCGGAGTGAGGAGAGCCAGGAAAAGGAGTACAAGAGAAACCACCCCGAC
TCTGAACTGGAAAGCACAGCAAACAGACACAGTGAAGAAACTGAGGAAGAGAGGAGCTACGAGG
GGGCAAAGGGACGACAACACAGAGGCAGGGGGCGGGAGCCAGGAGCTTATCCTGCTCTTGACAG
CAGACAAGAAAAAAGGCTCCTGGATGAAGGGCATGACCCTGTTCATGAAAGCCCAGTAGATACG
GCAAAAAGGTATCCACAAAGCAAATGGCAGGAACAGGAGAAAAACTACCTCAACTATGACGAGG
AAGGGGACCAAGGAAGATGGTGGCAGCAGGAAGAGCAGCTAGAACCGGAAGAAAGCAGGGAGGA
AGTGAGCTTTCCAGACAGACAATACGCGCCCTACCCCACCACTGAAAAGAGGAAGAGGCTAGGG
GCGCTGTTCAACCCGTACTTTGACCCTCTCCAGTGGAAGAATAGCGACTTTGAGAAAAAAGGCA
ACCCAGATGACAGTTTCCTTGATGATGACGGCGAAGACGGAAATGGGGTGACAATGACTGAGAA
GAATTTCTTCCCAGAGTACAACTATGACTGGTGGGAGAAAAGGCCCTTCTCGGAGGATGTGAAT
TGGGGATATGAGAAGAGAAGCTTTGCCAGGGCCCCTCACTTGGACTTGAAAAGGCAATACGACG
ATGGAGTGGCTGAACTGGACCAGCTCCTTCACTACAGGAAGAAGGCAGCCGAATTTCCCGACTT
CTACGATTCAGAGGAGCAGATGGGGCCTCACCAGGAGGCAGAAGATGAAAAGGACAGGGCTGAC
CAGAGAGTTCTGACCGAGGAAGAGAAAAAGGAACTGGAGAACTTGGCGGCCATGGATCTGGAAC
TGCAGAAAATAGCGGAAAAGTTCAGCCAGCGGGGCTGACAGTCGGAGAGACGAGCCATTCGCTG
AAAGACAGCATTGATTCACCCAAAGGCAGAAAGCAGAATTTACTATTTATTAAATGTTTGATGC
AGTTGGAAATATCACTAATCTTTGCCAGAATGCTAATGCTATGCGACTAGCGTGACTTGTAGCA
TATTCTTCCTGCAAAATAGATGTTCCACATGTCTGTGACAATGACCGTGTTACTGTCTTTGAAA
CACAAACAATAAAAGATTTACCTGAAACAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_036658	(Get FASTA)	NCBI Sequence Viewer
	XP_006235134	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAB72089	(Get FASTA)	NCBI Sequence Viewer
	AAI28744	(Get FASTA)	NCBI Sequence Viewer
	EDL80273	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000028892
	ENSRNOP00000104738
GenBank Protein	O35314	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_036658 ⟸ NM_012526
- Peptide Label:	precursor
- UniProtKB:	Q9QVG8 (UniProtKB/Swiss-Prot), A1A5N9 (UniProtKB/Swiss-Prot), Q9QVH1 (UniProtKB/Swiss-Prot), O35314 (UniProtKB/Swiss-Prot), A0A8L2QFU5 (UniProtKB/TrEMBL), A6HQH2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQRAMLLGLLGAAALAAVISAPVDNRDHNEEMVTRCIIEVLSNALSKSSAPTITPECRQVLRKS GKEVKGEEKGENENSKFEVRLLRDPSDASVGRWASSREETGAPVEDSPGQAKVDNEEWTGGGGH SREAVDDQESLHPSNQQVSKEAKIRHSEERGGKEEEEEEGKIYPKGEHRGDAGEEKKHTEESGE KHNAFSNKRSEASAKKKEESVARAEAHFVELEKTHSREQSSQESGEETRRQEKPQELPDQDQSE EESEEGEEGEEGATSEVTKRRPRHHHWRSQSNKPSYEGRRPLSEERKHAAGESKDANVATANLG EKRGHHLAHYRASEEEPDYGEELRSYPGFQAPQGLQYQGRGSEEVRAPSPRSEESQEKEYKRNH PDSELESTANRHSEETEEERSYEGAKGRQHRGRGREPGAYPALDSRQEKRLLDEGHDPVHESPV DTAKRYPQSKWQEQEKNYLNYDEEGDQGRWWQQEEQLEPEESREEVSFPDRQYAPYPTTEKRKR LGALFNPYFDPLQWKNSDFEKKGNPDDSFLDDDGEDGNGVTMTEKNFFPEYNYDWWEKRPFSED VNWGYEKRSFARAPHLDLKRQYDDGVAELDQLLHYRKKAAEFPDFYDSEEQMGPHQEAEDEKDR ADQRVLTEEEKKELENLAAMDLELQKIAEKFSQRG hide sequence

RefSeq Acc Id:	XP_006235134 ⟸ XM_006235072
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AW29 (UniProtKB/TrEMBL), A0A8L2QFU5 (UniProtKB/TrEMBL), A6HQH2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQLASGTMQRAMLLGLLGAAALAELFERTSTTICAVISAPVDNRDHNEEMVTRCIIEVLSNALS KSSAPTITPECRQVLRKSGKEVKGEEKGENENSKFEVRLLRDPSDASVGRWASSREETGAPVED SPGQAKVDNEEWTGGGGHSREAVDDQESLHPSNQQVSKEAKIRHSEERGGKEEEEEEGKIYPKG EHRGDAGEEKKHTEESGEKHNAFSNKRSEASAKKKEESVARAEAHFVELEKTHSREQSSQESGE ETRRQEKPQELPDQDQSEEESEEGEEGEEGATSEVTKRRPRHHHWRSQSNKPSYEGRRPLSEER KHAAGESKDANVATANLGEKRGHHLAHYRASEEEPDYGEELRSYPGFQAPQGLQYQGRGSEEVR APSPRSEESQEKEYKRNHPDSELESTANRHSEETEEERSYEGAKGRQHRGRGREPGAYPALDSR QEKRLLDEGHDPVHESPVDTAKRYPQSKWQEQEKNYLNYDEEGDQGRWWQQEEQLEPEESREEV SFPDRQYAPYPTTEKRKRLGALFNPYFDPLQWKNSDFEKKGNPDDSFLDDDGEDGNGVTMTEKN FFPEYNYDWWEKRPFSEDVNWGYEKRSFARAPHLDLKRQYDDGVAELDQLLHYRKKAAEFPDFY DSEEQMGPHQEAEDEKDRADQRVLTEEEKKELENLAAMDLELQKIAEKFSQRG hide sequence

Ensembl Acc Id:

ENSRNOP00000028892 ⟸ ENSRNOT00000028892

Ensembl Acc Id:

ENSRNOP00000087656 ⟸ ENSRNOT00000094256

Ensembl Acc Id:

ENSRNOP00000097178 ⟸ ENSRNOT00000106886

Ensembl Acc Id:

ENSRNOP00000104738 ⟸ ENSRNOT00000148554

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O35314-F1-model_v2	AlphaFold	O35314	1-675	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692458

Promoter ID:

EPDNEW_R2981

Type:

single initiation site

Name:

Chgb_1

Description:

chromogranin B

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	125,428,460 - 125,428,520	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2339	AgrOrtholog
BioCyc Gene	G2FUF-47765	BioCyc
Ensembl Genes	ENSRNOG00000021269	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000028892	ENTREZGENE
	ENSRNOT00000148554	ENTREZGENE
IMAGE_CLONE	IMAGE:8370781	IMAGE-MGC_LOAD
InterPro	Chromogranin_AB	UniProtKB/Swiss-Prot
	Chromogranin_CS	UniProtKB/Swiss-Prot
	Granin	UniProtKB/Swiss-Prot
KEGG Report	rno:24259	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:156676	IMAGE-MGC_LOAD
NCBI Gene	24259	ENTREZGENE
PANTHER	PTHR10583	UniProtKB/Swiss-Prot
	SECRETOGRANIN-1	UniProtKB/Swiss-Prot
Pfam	Granin	UniProtKB/Swiss-Prot
PhenoGen	Chgb	PhenoGen
PRINTS	CHROMOGRANIN	UniProtKB/Swiss-Prot
PROSITE	GRANINS_1	UniProtKB/Swiss-Prot
	GRANINS_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000021269	RatGTEx
TIGR	TC228335
UniProt	A0A8I6A6A1_RAT	UniProtKB/TrEMBL
	A0A8I6AW29	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2QFU5	ENTREZGENE, UniProtKB/TrEMBL
	A1A5N9	ENTREZGENE
	A6HQH2	ENTREZGENE, UniProtKB/TrEMBL
	O35314	ENTREZGENE
	Q9QVG8	ENTREZGENE
	Q9QVH1	ENTREZGENE
	SCG1_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	A1A5N9	UniProtKB/Swiss-Prot
	Q9QVG8	UniProtKB/Swiss-Prot
	Q9QVH1	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-03-26	Chgb	chromogranin B	Chgb	chromogranin B (secretogranin 1)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-01-09	Chgb	chromogranin B (secretogranin 1)	Chgb	chromogranin B	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-11-06	Chgb	chromogranin B		Chromogranin B, parathyroid secretory protein	Name updated	625702	APPROVED
2002-06-10	Chgb	Chromogranin B, parathyroid secretory protein			Symbol and Name status set to approved	70586	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar