Mir330 (microRNA 330) - Rat Genome Database

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Gene: Mir330 (microRNA 330) Rattus norvegicus
Analyze
Symbol: Mir330
Name: microRNA 330
RGD ID: 2325620
Description: Predicted to act upstream of or within juxtaglomerular apparatus development; long-term synaptic potentiation; and negative regulation of gene expression. Orthologous to human MIR330 (microRNA 330); INTERACTS WITH 2,5-hexanedione; atrazine; bleomycin A2.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-330; rno-mir-330
RGD Orthologs
Human
Mouse
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,961,207 - 87,961,303 (+)NCBIGRCr8
GRCr8 Ensembl187,961,207 - 87,961,303 (+)EnsemblGRCr8 Ensembl
mRatBN7.2178,833,178 - 78,833,274 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,833,178 - 78,833,274 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,222,262 - 84,222,358 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,779,863 - 92,779,959 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,977,353 - 85,977,449 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,092,681 - 80,092,777 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,092,681 - 80,092,777 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,358,760 - 81,358,856 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera173,298,803 - 73,298,899 (+)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. miR-96 and miR-330 overexpressed and targeted AQP5 in lipopolysaccharide-induced rat lung damage of disseminated intravascular coagulation. Zhang Y, etal., Blood Coagul Fibrinolysis. 2014 Oct;25(7):731-7. doi: 10.1097/MBC.0000000000000133.
Additional References at PubMed
PMID:14691248   PMID:16381832   PMID:17604727   PMID:20403161   PMID:21993888   PMID:25858512   PMID:30015907   PMID:32360974   PMID:33508876   PMID:35451738   PMID:36794530   PMID:37584866  


Genomics

Comparative Map Data
Mir330
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,961,207 - 87,961,303 (+)NCBIGRCr8
GRCr8 Ensembl187,961,207 - 87,961,303 (+)EnsemblGRCr8 Ensembl
mRatBN7.2178,833,178 - 78,833,274 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,833,178 - 78,833,274 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx184,222,262 - 84,222,358 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,779,863 - 92,779,959 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,977,353 - 85,977,449 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0180,092,681 - 80,092,777 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,092,681 - 80,092,777 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0181,358,760 - 81,358,856 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera173,298,803 - 73,298,899 (+)NCBICelera
Cytogenetic Map1q21NCBI
MIR330
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,638,994 - 45,639,087 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,638,994 - 45,639,087 (-)EnsemblGRCh38hg38GRCh38
GRCh371946,142,252 - 46,142,345 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,834,091 - 50,834,184 (-)NCBINCBI36Build 36hg18NCBI36
Celera1942,948,362 - 42,948,455 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,571,370 - 42,571,463 (-)NCBIHuRef
CHM1_11946,145,522 - 46,145,615 (-)NCBICHM1_1
T2T-CHM13v2.01948,466,260 - 48,466,353 (-)NCBIT2T-CHM13v2.0
Mir330
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39718,915,390 - 18,915,487 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl718,915,390 - 18,915,487 (+)EnsemblGRCm39 Ensembl
GRCm38719,181,465 - 19,181,562 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,181,465 - 19,181,562 (+)EnsemblGRCm38mm10GRCm38
MGSCv37719,766,814 - 19,766,911 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera716,593,315 - 16,593,412 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.46NCBI
MIR330
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,922,138 - 109,922,226 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,922,124 - 109,922,231 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1109,407,206 - 109,407,294 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01110,455,335 - 110,455,423 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11110,130,892 - 110,130,980 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,765,521 - 109,765,609 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,634,432 - 110,634,520 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in Mir330
1 total Variants
miRNA Target Status (No longer updated)

Predicted Targets
Summary Value
Count of predictions:17907
Count of gene targets:8907
Count of transcripts:9723
Interacting mature miRNAs:rno-miR-330-3p, rno-miR-330-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat


Expression

RNA-SEQ Expression

circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
2 37 7 6 3 6 3 14 11 34 12 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_031777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000053688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl187,961,207 - 87,961,303 (+)Ensembl
mRatBN7.2 Ensembl178,833,178 - 78,833,274 (+)Ensembl
Rnor_6.0 Ensembl180,092,681 - 80,092,777 (+)Ensembl
RefSeq Acc Id: NR_031777
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8187,961,207 - 87,961,303 (+)NCBI
mRatBN7.2178,833,178 - 78,833,274 (+)NCBI
Rnor_6.0180,092,681 - 80,092,777 (+)NCBI
Rnor_5.0181,358,760 - 81,358,856 (+)NCBI
Celera173,298,803 - 73,298,899 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325620 AgrOrtholog
BioCyc Gene G2FUF-60523 BioCyc
Ensembl Genes ENSRNOG00000035565 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000053688 ENTREZGENE
miRBase MI0000606 ENTREZGENE
NCBI Gene 100313974 ENTREZGENE
PhenoGen Mir330 PhenoGen
RatGTEx ENSRNOG00000035565 RatGTEx
RNAcentral URS00003380C1 RNACentral
  URS00004CBBFA RNACentral
  URS00006834ED RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 Mir330  microRNA 330  Mir330  microRNA mir-330  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-02 Mir330  microRNA mir-330      Symbol and Name status set to provisional 70820 PROVISIONAL