Mir30c1 (microRNA 30c-1) - Rat Genome Database

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Gene: Mir30c1 (microRNA 30c-1) Rattus norvegicus
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Symbol: Mir30c1
Name: microRNA 30c-1
RGD ID: 2325590
Description: Predicted to enable high-density lipoprotein particle binding activity and mRNA base-pairing translational repressor activity. Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to act upstream of or within several processes, including cellular response to forskolin; long-term synaptic potentiation; and negative regulation of osteoblast differentiation. Predicted to be located in extracellular exosome. Predicted to be part of RISC complex. Orthologous to human MIR30C1 (microRNA 30c-1); INTERACTS WITH bisphenol A; dioxygen; mechlorethamine.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Mir30c-1; rno-mir-30c-1
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85139,634,455 - 139,634,543 (-)NCBIGRCr8
mRatBN7.25134,349,237 - 134,349,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5134,349,237 - 134,349,325 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5137,076,728 - 137,076,816 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05138,833,199 - 138,833,287 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05138,853,814 - 138,853,902 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05139,699,877 - 139,699,965 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5139,699,877 - 139,699,965 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05143,494,757 - 143,494,845 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5132,903,568 - 132,903,656 (-)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14691248   PMID:15345052   PMID:16381832   PMID:16766679   PMID:17604727   PMID:17805466   PMID:18762567   PMID:20403161   PMID:21628588   PMID:21993888   PMID:23185045   PMID:24205035  
PMID:25858512   PMID:25882492   PMID:26149869   PMID:27199283   PMID:27874055   PMID:30635067   PMID:30776367   PMID:32434515   PMID:33161310   PMID:34217758   PMID:36430472  


Genomics

Comparative Map Data
Mir30c1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85139,634,455 - 139,634,543 (-)NCBIGRCr8
mRatBN7.25134,349,237 - 134,349,325 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5134,349,237 - 134,349,325 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5137,076,728 - 137,076,816 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05138,833,199 - 138,833,287 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05138,853,814 - 138,853,902 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05139,699,877 - 139,699,965 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5139,699,877 - 139,699,965 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05143,494,757 - 143,494,845 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera5132,903,568 - 132,903,656 (-)NCBICelera
Cytogenetic Map5q36NCBI
MIR30C1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38140,757,284 - 40,757,372 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl140,757,284 - 40,757,372 (+)EnsemblGRCh38hg38GRCh38
GRCh37141,222,956 - 41,223,044 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36140,995,542 - 40,995,630 (+)NCBINCBI36Build 36hg18NCBI36
Celera139,505,156 - 39,505,244 (+)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef139,341,077 - 39,341,165 (+)NCBIHuRef
CHM1_1141,338,787 - 41,338,875 (+)NCBICHM1_1
T2T-CHM13v2.0140,626,494 - 40,626,582 (+)NCBIT2T-CHM13v2.0
Mir30c-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394120,626,731 - 120,626,819 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4120,626,731 - 120,626,819 (-)EnsemblGRCm39 Ensembl
GRCm384120,769,534 - 120,769,622 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4120,769,534 - 120,769,622 (-)EnsemblGRCm38mm10GRCm38
MGSCv374120,442,139 - 120,442,227 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera4119,487,732 - 119,487,820 (-)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map456.52NCBI
MIR30C-1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1152,280,050 - 2,280,110 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl152,280,039 - 2,280,121 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha152,538,350 - 2,538,410 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0152,369,429 - 2,369,489 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl152,369,418 - 2,369,500 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1152,274,894 - 2,274,954 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0152,334,967 - 2,335,027 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0152,350,801 - 2,350,861 (-)NCBIUU_Cfam_GSD_1.0
MIR30C-1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6170,426,781 - 170,426,860 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16170,426,781 - 170,426,860 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26157,473,595 - 157,473,674 (-)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Confirmed Targets
Gene TargetMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Neurod1rno-miR-30c-5pMirtarbaseexternal_infoMicroarrayFunctional MTI (Weak)18258830

Predicted Targets
Summary Value
Count of predictions:18616
Count of gene targets:8923
Count of transcripts:9663
Interacting mature miRNAs:rno-miR-30c-1-3p, rno-miR-30c-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
7365049Bp359Blood pressure QTL 359arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128071929134724733Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
70156Niddm30Non-insulin dependent diabetes mellitus QTL 303.98blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)5129132447151006154Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5129132428143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
631505Bp103Blood pressure QTL 1033.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5132717196165560427Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat


Expression

RNA-SEQ Expression

appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 8 17 20 20 4 16 4 52 32 9 8 11 16

Sequence


Ensembl Acc Id: ENSRNOT00000053690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5134,349,237 - 134,349,325 (-)Ensembl
Rnor_6.0 Ensembl5139,699,877 - 139,699,965 (-)Ensembl
RefSeq Acc Id: NR_031839
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85139,634,455 - 139,634,543 (-)NCBI
mRatBN7.25134,349,237 - 134,349,325 (-)NCBI
Rnor_6.05139,699,877 - 139,699,965 (-)NCBI
Rnor_5.05143,494,757 - 143,494,845 (-)NCBI
Celera5132,903,568 - 132,903,656 (-)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325590 AgrOrtholog
BioCyc Gene G2FUF-40056 BioCyc
Ensembl Genes ENSRNOG00000035567 Ensembl
miRBase MI0000866 ENTREZGENE
NCBI Gene 100314009 ENTREZGENE
PhenoGen Mir30c1 PhenoGen
RatGTEx ENSRNOG00000035567 RatGTEx
RNAcentral URS000019907A RNACentral
  URS0000237FB8 RNACentral
  URS000075BC7E RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-27 Mir30c1  microRNA 30c-1  Mir30c-1  microRNA 30c-1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-04-09 Mir30c-1  microRNA 30c-1  Mir30c-1  microRNA mir-30c-1  Name updated 61478 APPROVED
2010-06-02 Mir30c-1  microRNA mir-30c-1      Symbol and Name status set to provisional 70820 PROVISIONAL