Mir582 (microRNA 582) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Mir582 (microRNA 582) Rattus norvegicus
Analyze
Symbol: Mir582
Name: microRNA 582
RGD ID: 2325413
Description: Predicted to enable mRNA base-pairing translational repressor activity. Predicted to be involved in miRNA-mediated gene silencing. Orthologous to human MIR582 (microRNA 582); INTERACTS WITH 2,5-hexanedione; aflatoxin B1; atrazine.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-582
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2240,928,571 - 40,928,651 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl240,928,571 - 40,928,651 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx248,037,984 - 48,038,064 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0246,096,695 - 46,096,775 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0240,949,533 - 40,949,613 (+)NCBIRnor_WKY
Rnor_6.0240,863,750 - 40,863,830 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl240,863,750 - 40,863,830 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0259,928,607 - 59,928,687 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera236,763,280 - 36,763,360 (+)NCBICelera
Cytogenetic Map2q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:18215311   PMID:20403161   PMID:34751119  


Genomics

Comparative Map Data
Mir582
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2240,928,571 - 40,928,651 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl240,928,571 - 40,928,651 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx248,037,984 - 48,038,064 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0246,096,695 - 46,096,775 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0240,949,533 - 40,949,613 (+)NCBIRnor_WKY
Rnor_6.0240,863,750 - 40,863,830 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl240,863,750 - 40,863,830 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0259,928,607 - 59,928,687 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera236,763,280 - 36,763,360 (+)NCBICelera
Cytogenetic Map2q14NCBI
MIR582
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38559,703,606 - 59,703,703 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl559,703,606 - 59,703,703 (-)EnsemblGRCh38hg38GRCh38
GRCh37558,999,432 - 58,999,529 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36559,035,188 - 59,035,285 (-)NCBINCBI36Build 36hg18NCBI36
Celera555,939,701 - 55,939,798 (-)NCBICelera
Cytogenetic Map5q12.1NCBI
HuRef555,957,148 - 55,957,245 (-)NCBIHuRef
CHM1_1558,999,107 - 58,999,204 (-)NCBICHM1_1
T2T-CHM13v2.0560,521,861 - 60,521,958 (-)NCBIT2T-CHM13v2.0
Mir582
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913109,461,278 - 109,461,358 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13109,461,278 - 109,461,358 (+)EnsemblGRCm39 Ensembl
GRCm3813109,324,744 - 109,324,824 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13109,324,744 - 109,324,824 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713110,114,938 - 110,115,018 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera13113,648,780 - 113,648,860 (+)NCBICelera
Cytogenetic Map13D2.1NCBI
MIR582
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1246,497,270 - 46,497,350 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl246,497,270 - 46,497,350 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha243,573,246 - 43,573,326 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0246,981,261 - 46,981,341 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl246,981,261 - 46,981,341 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1244,044,537 - 44,044,617 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0244,857,823 - 44,857,903 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0245,690,769 - 45,690,849 (-)NCBIUU_Cfam_GSD_1.0
MIR582
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1638,580,344 - 38,580,420 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11638,580,344 - 38,580,420 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21641,335,754 - 41,335,830 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:6499
Count of gene targets:4449
Count of transcripts:4769
Interacting mature miRNAs:rno-miR-582-3p, rno-miR-582-5p
Prediction methods:Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
731179Mamtr3Mammary tumor resistance QTL 30.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)23237377043665178Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system nervous system renal system reproductive system respiratory system
High
Medium
Low 5 2 5 2 8 5 4 5
Below cutoff 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_032746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000062187
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl240,928,571 - 40,928,651 (+)Ensembl
Rnor_6.0 Ensembl240,863,750 - 40,863,830 (+)Ensembl
RefSeq Acc Id: NR_032746
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2240,928,571 - 40,928,651 (+)NCBI
Rnor_6.0240,863,750 - 40,863,830 (+)NCBI
Rnor_5.0259,928,607 - 59,928,687 (+)NCBI
Celera236,763,280 - 36,763,360 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325413 AgrOrtholog
BioCyc Gene G2FUF-54454 BioCyc
Ensembl Genes ENSRNOG00000040434 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000062187 ENTREZGENE
miRBase MI0012595 ENTREZGENE
NCBI Gene 100314209 ENTREZGENE
PhenoGen Mir582 PhenoGen
RNAcentral URS000075A1F0 RNACentral
  URS000075D795 RNACentral
  URS000075D898 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir582  microRNA 582  Mir582  microRNA mir-582  Name updated 61478 APPROVED
2010-06-02 Mir582  microRNA mir-582      Symbol and Name status set to provisional 70820 PROVISIONAL