Sec61g-ps4 (Sec61 translocon subunit gamma, pseudogene 4) - Rat Genome Database

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Gene: Sec61g-ps4 (Sec61 translocon subunit gamma, pseudogene 4) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Sec61g-ps4
Name: Sec61 translocon subunit gamma, pseudogene 4
RGD ID: 2324557
Description:
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: AABR07041141.1; LOC100362376; LRRGT00025; LRRGT00025-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Sec61g  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X118,232,609 - 118,232,935 (-)NCBIGRCr8
mRatBN7.2X113,427,370 - 113,427,696 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX113,427,440 - 113,427,646 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX115,472,347 - 115,472,673 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X118,963,592 - 118,963,918 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X116,517,224 - 116,517,550 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X120,521,595 - 120,521,921 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX120,521,665 - 120,521,871 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0X120,667,904 - 120,668,237 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X10,962,927 - 10,963,133 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX112,652,037 - 112,652,363 (-)NCBICelera
Cytogenetic MapXq34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Sec61g-ps4
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000080863   ⟹   ENSRNOP00000072597
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX113,427,440 - 113,427,646 (-)Ensembl
RefSeq Acc Id: XM_002727660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
CeleraX112,652,107 - 112,652,313 (-)RGD
RefSeq Acc Id: XM_002730181
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
RGSC_v3.4X10,962,927 - 10,963,133 (+)RGD
Protein Sequences
GenBank Protein AAQ96238 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000072597.1
Ensembl Acc Id: ENSRNOP00000072597   ⟸   ENSRNOT00000080863

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6TXH4-F1-model_v2 AlphaFold Q6TXH4 1-68 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2324557 AgrOrtholog
BioCyc Gene G2FUF-1350 BioCyc
Ensembl Genes ENSRNOG00000061620 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000080863.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.820 UniProtKB/TrEMBL
InterPro Prot_translocase_SecE_dom_sf UniProtKB/TrEMBL
  Translocase_Sec61-g UniProtKB/TrEMBL
  Translocase_SecE/Sec61-g UniProtKB/TrEMBL
NCBI Gene 100362376 ENTREZGENE
PANTHER PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA UniProtKB/TrEMBL
  SEC61 GAMMA SUBUNIT UniProtKB/TrEMBL
Pfam SecE UniProtKB/TrEMBL
PhenoGen Sec61g-ps4 PhenoGen
RatGTEx ENSRNOG00000061620 RatGTEx
Superfamily-SCOP SSF103456 UniProtKB/TrEMBL
UniProt Q6TXH4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Sec61g-ps4  Sec61 translocon subunit gamma, pseudogene 4  LOC100362376  LRRGT00025-like  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC100362376  LRRGT00025-like  AABR07041141.1    Data merged from RGD:15014215 737654 PROVISIONAL
2019-11-08 AABR07041141.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2010-05-06 LOC100362376  LRRGT00025-like      Symbol and Name status set to provisional 70820 PROVISIONAL