Hnrnpa1-ps27 (heterogeneous nuclear ribonucleoprotein A1, pseudogene 27) - Rat Genome Database

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Gene: Hnrnpa1-ps27 (heterogeneous nuclear ribonucleoprotein A1, pseudogene 27) Rattus norvegicus
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Symbol: Hnrnpa1-ps27
Name: heterogeneous nuclear ribonucleoprotein A1, pseudogene 27
RGD ID: 2323641
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: heterogeneous nuclear ribonucleoprotein A1-like; LOC100359553
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81593,790,807 - 93,791,605 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21587,375,996 - 87,415,696 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01595,322,790 - 95,323,886 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01598,804,149 - 98,805,234 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41594,916,082 - 94,937,645 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1586,393,122 - 86,394,207 (+)NCBICelera
Cytogenetic Map15q23NCBI
JBrowse:




References

Genomics

Variants

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Variants in Hnrnpa1-ps27
3 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)1560213984105213984Rat
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1544806773104695021Rat
1549844Bss7Bone structure and strength QTL 76.4femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1582194914108192169Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)156244089297773284Rat
2300326Plaw1Placental weight QTL 1150.005placenta mass (VT:0004257)placenta wet weight (CMO:0002088)1574735564106469153Rat
1300118Bp190Blood pressure QTL 1902.94arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)1588677086104695021Rat
1358354Srcrt5Stress Responsive Cort QTL 53.38blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1582503470108192169Rat
70182BpQTLcluster12Blood pressure QTL cluster 123.53arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)1572716871101425383Rat
70155Gcs1Gastric cancer susceptibility QTL13.8stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)1582714037106778197Rat
1300120Kidm7Kidney mass QTL 73.55kidney mass (VT:0002707)left kidney wet weight to body weight ratio (CMO:0001954)1588677086104695021Rat
631655Bp126Blood pressure QTL 1264arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1564571127108192169Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
7411646Foco21Food consumption QTL 2123.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)1584278281108192169Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1572716871101425383Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)1561710951106710951Rat
1331724Bp223Blood pressure QTL 2233.53715arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1575928947101425383Rat
1641889Colcr6Colorectal carcinoma resistance QTL 62.90.0126intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)1583700787108192169Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1559257087104257087Rat
2313080Bss65Bone structure and strength QTL 653.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1567399137108192169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
2317055Aia10Adjuvant induced arthritis QTL 103.41joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1582194914108192169Rat

Markers in Region
ha3147  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01598,820,042 - 98,821,340NCBIRnor5.0
Rnor_5.02246,623,569 - 246,624,300NCBIRnor5.0
RGSC_v3.41594,931,976 - 94,933,273UniSTSRGSC3.4
RGSC_v3.42219,784,345 - 219,785,075UniSTSRGSC3.4
Celera1586,409,016 - 86,410,313UniSTS
Celera2203,651,549 - 203,652,279UniSTS
Cytogenetic Map2q42UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12580 BioCyc
NCBI Gene 100359553 ENTREZGENE
PhenoGen Hnrnpa1-ps27 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Hnrnpa1-ps27  heterogeneous nuclear ribonucleoprotein A1, pseudogene 27  LOC100359553  heterogeneous nuclear ribonucleoprotein A1-like  Symbol and Name Changed 1299863 APPROVED
2010-05-06 LOC100359553  heterogeneous nuclear ribonucleoprotein A1-like      Symbol and Name status set to provisional 70820 PROVISIONAL