Rps20-ps12 (ribosomal protein S20, pseudogene 12) - Rat Genome Database

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Gene: Rps20-ps12 (ribosomal protein S20, pseudogene 12) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps20-ps12 (Ensembl: Rps20-ps11)
Name: ribosomal protein S20, pseudogene 12 (Ensembl:ribosomal protein S20, pseudogene 11)
RGD ID: 2323094
Description: Orthologous to human RPS20 (ribosomal protein S20).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 40S ribosomal protein S20; LOC100359951; ribosomal protein S20-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Rps20  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr894,395,735 - 4,396,094 (-)NCBIGRCr8
mRatBN7.294,159,073 - 4,159,432 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl322,430,259 - 22,430,740 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl94,159,021 - 4,159,547 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.091,012,044 - 1,012,567 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl91,012,091 - 1,012,450 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl322,964,230 - 22,964,732 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09973,862 - 974,369 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.493,955,248 - 3,955,607 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera91,058,150 - 1,058,674 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)927457995857951Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system nervous system renal system reproductive system
High
Medium
Low 6 6 6 13 6 8
Below cutoff 2 22 18 18 1 18 20 14 15

Sequence


RefSeq Acc Id: ENSRNOT00000041813   ⟹   ENSRNOP00000065886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl322,430,259 - 22,430,740 (+)Ensembl
Rnor_6.0 Ensembl322,964,230 - 22,964,732 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000051449   ⟹   ENSRNOP00000069127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl94,159,021 - 4,159,547 (-)Ensembl
Rnor_6.0 Ensembl91,012,091 - 1,012,450 (-)Ensembl
RefSeq Acc Id: XM_002729994   ⟹   XP_002730040
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.294,159,026 - 4,159,544 (-)NCBI
Rnor_6.091,012,044 - 1,012,567 (-)NCBI
Rnor_5.09973,862 - 974,369 (-)NCBI
RGSC_v3.493,955,248 - 3,955,607 (+)RGD
Sequence:
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P60868-F1-model_v2 AlphaFold P60868 1-119 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2323094 AgrOrtholog
BioCyc Gene G2FUF-28422 BioCyc
Ensembl Genes ENSRNOG00000029627 Ensembl
  ENSRNOG00000030345 Ensembl
NCBI Gene 100359951 ENTREZGENE
PhenoGen Rps20-ps12 PhenoGen
RatGTEx ENSRNOG00000029627 RatGTEx
  ENSRNOG00000030345 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps20-ps12  ribosomal protein S20, pseudogene 12  LOC100359951  ribosomal protein S20-like  Symbol and Name Changed 1299863 APPROVED
2010-05-06 LOC100359951  ribosomal protein S20-like      Symbol and Name status set to provisional 70820 PROVISIONAL