Kin-ps1 (Kin17 DNA and RNA binding protein, pseudogene 1) - Rat Genome Database

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Gene: Kin-ps1 (Kin17 DNA and RNA binding protein, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Kin-ps1
Name: Kin17 DNA and RNA binding protein, pseudogene 1
RGD ID: 2322726
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: antigenic determinant of rec-A protein-like; LOC100360123
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8919,331,294 - 19,333,260 (+)NCBIGRCr8
mRatBN7.2911,833,930 - 11,835,584 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0913,781,505 - 13,782,672 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0912,712,541 - 12,713,345 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.496,991,112 - 7,047,583 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera99,610,490 - 9,611,657 (+)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Kin-ps1
24 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat

Markers in Region
D9Rat135  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2911,765,564 - 11,765,695 (+)MAPPERmRatBN7.2
Rnor_6.0913,713,787 - 13,713,917NCBIRnor6.0
Rnor_5.0912,644,963 - 12,645,093UniSTSRnor5.0
RGSC_v3.496,977,768 - 6,977,899RGDRGSC3.4
RGSC_v3.496,977,769 - 6,977,899UniSTSRGSC3.4
RGSC_v3.196,977,768 - 6,977,899RGD
Celera99,538,968 - 9,539,098UniSTS
RH 3.4 Map920.4UniSTS
RH 3.4 Map920.4RGD
RH 2.0 Map925.1RGD
SHRSP x BN Map99.1598RGD
Cytogenetic Map9q11UniSTS
D9Got15  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2911,735,861 - 11,735,976 (+)MAPPERmRatBN7.2
Rnor_6.0913,683,965 - 13,684,079NCBIRnor6.0
Rnor_5.0912,615,141 - 12,615,255UniSTSRnor5.0
RGSC_v3.496,948,066 - 6,948,180UniSTSRGSC3.4
RGSC_v3.496,948,065 - 6,948,180RGDRGSC3.4
RGSC_v3.196,948,066 - 6,948,180RGD
Celera99,508,961 - 9,509,075UniSTS
RH 3.4 Map920.3UniSTS
RH 3.4 Map920.3RGD
RH 2.0 Map923.6RGD
BF403843  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2911,819,778 - 11,820,231 (+)MAPPERmRatBN7.2
Rnor_6.0913,767,997 - 13,768,449NCBIRnor6.0
Rnor_5.0912,699,074 - 12,699,526UniSTSRnor5.0
RGSC_v3.497,032,442 - 7,032,894UniSTSRGSC3.4
Celera99,596,154 - 9,596,606UniSTS
RH 3.4 Map925.4UniSTS


Expression


Sequence


RefSeq Acc Id: XM_003750639   ⟹   XP_003750687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.0912,609,377 - 12,713,624 (+)NCBI
RefSeq Acc Id: XM_003754501   ⟹   XP_003754549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera99,504,155 - 9,611,789 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28331 BioCyc
NCBI Gene 100360123 ENTREZGENE
PhenoGen Kin-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Kin-ps1  Kin17 DNA and RNA binding protein, pseudogene 1  LOC100360123  antigenic determinant of rec-A protein-like  Symbol and Name Changed 1299863 APPROVED
2010-05-06 LOC100360123  antigenic determinant of rec-A protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL