LOC100361180 (40S ribosomal protein S17-like) - Rat Genome Database

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Gene: LOC100361180 (40S ribosomal protein S17-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC100361180
Name: 40S ribosomal protein S17-like
RGD ID: 2320681
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytosolic ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 4. Orthologous to human RPS17 (ribosomal protein S17).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07018533.1; small ribosomal subunit protein eS17-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81563,585,894 - 63,587,992 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.21557,178,425 - 57,179,006 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1557,178,469 - 57,178,978 (-)EnsemblmRatBN7.2
Rnor_6.01564,190,561 - 64,191,115 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1564,190,606 - 64,191,115 (-)NCBIrn6Rnor6.0
Rnor_5.01567,827,829 - 67,829,875 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41563,206,557 - 63,208,603 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1556,736,852 - 56,737,406 (-)NCBICelera
Cytogenetic Map15q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC100361180
2 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)154063126898288169Rat
1576315Schws6Schwannoma susceptibility QTL 60.0069nervous system integrity trait (VT:0010566)post-insult time of death (CMO:0002005)155380615298806152Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
61477Aia4Adjuvant induced arthritis QTL 43joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)155559608991365858Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
724545Niddm54Non-insulin dependent diabetes mellitus QTL 540.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)155079449473699215Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
631516Gluco31Glucose level QTL 317blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)155559608995018120Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2317050Aia24Adjuvant induced arthritis QTL 242.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)155284790873690657Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 8 32 56 101 71 8 34 23 17 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000013868   ⟹   ENSRNOP00000013868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1557,178,469 - 57,178,978 (-)Ensembl
RefSeq Acc Id: XM_063274835   ⟹   XP_063130905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81563,585,894 - 63,587,992 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063130905 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013868.7
Ensembl Acc Id: ENSRNOP00000013868   ⟸   ENSRNOT00000013868
RefSeq Acc Id: XP_063130905   ⟸   XM_063274835
- UniProtKB: D3ZHU9 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZHU9-F1-model_v2 AlphaFold D3ZHU9 1-136 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2320681 AgrOrtholog
BioCyc Gene G2FUF-12964 BioCyc
Ensembl Genes ENSRNOG00000048927 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013868.7 UniProtKB/TrEMBL
Gene3D-CATH 1.10.60.20 UniProtKB/TrEMBL
InterPro Ribosomal_S17e UniProtKB/TrEMBL
  Ribosomal_S17e_CS UniProtKB/TrEMBL
  RPS17e-like_sf UniProtKB/TrEMBL
NCBI Gene 100361180 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S17 UniProtKB/TrEMBL
  PTHR10732 UniProtKB/TrEMBL
Pfam Ribosomal_S17e UniProtKB/TrEMBL
PhenoGen LOC100361180 PhenoGen
PROSITE RIBOSOMAL_S17E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000048927 RatGTEx
Superfamily-SCOP SSF116820 UniProtKB/TrEMBL
UniProt D3ZHU9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC100361180  40S ribosomal protein S17-like  AABR07018533.1    Data merged from RGD:15005631 737654 PROVISIONAL
2019-11-08 AABR07018533.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2010-05-05 LOC100361180  40S ribosomal protein S17-like      Symbol and Name status set to provisional 70820 PROVISIONAL