Zfp964 (zinc finger protein 964) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Zfp964 (zinc finger protein 964) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Zfp964
Name: zinc finger protein 964
RGD ID: 2318713
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: gastrula zinc finger protein xLCGF3.1; LOC100362170; rCG38872-like; zinc finger protein 20; zinc finger protein 664; zinc finger protein 737; zinc finger protein 878
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81619,757,308 - 19,770,059 (-)NCBIGRCr8
mRatBN7.21619,721,765 - 19,736,148 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1619,722,005 - 19,736,117 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01621,472,222 - 21,484,922 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1621,472,267 - 21,473,808 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01621,386,221 - 21,398,921 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41620,211,120 - 20,220,813 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1619,917,415 - 19,930,115 (-)NCBICelera
Cytogenetic Map16p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Zfp964
72 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:26
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000066776
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
631517Scl9Serum cholesterol level QTL 93.3blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)161572643321034895Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat

Markers in Region
BF413049  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21619,723,069 - 19,723,166 (+)MAPPERmRatBN7.2
Rnor_6.01621,471,895 - 21,471,991NCBIRnor6.0
Rnor_5.01621,385,894 - 21,385,990UniSTSRnor5.0
RGSC_v3.41620,210,549 - 20,210,645UniSTSRGSC3.4
Celera1619,917,088 - 19,917,184UniSTS
RH 3.4 Map16241.33UniSTS
BE110209  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21619,723,437 - 19,723,592 (+)MAPPERmRatBN7.2
Rnor_6.01621,472,263 - 21,472,417NCBIRnor6.0
Rnor_5.01621,386,262 - 21,386,416UniSTSRnor5.0
RGSC_v3.41620,210,917 - 20,211,071UniSTSRGSC3.4
Celera1619,917,456 - 19,917,610UniSTS
RH 3.4 Map16240.82UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001433257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006252985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001833993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000066776   ⟹   ENSRNOP00000060023
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,722,005 - 19,736,117 (-)Ensembl
Rnor_6.0 Ensembl1621,472,267 - 21,473,808 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111556   ⟹   ENSRNOP00000080092
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1619,722,005 - 19,735,838 (-)Ensembl
RefSeq Acc Id: XM_006252982   ⟹   XP_006253044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,757,308 - 19,770,059 (-)NCBI
mRatBN7.21619,721,765 - 19,736,146 (-)NCBI
Rnor_6.01621,472,222 - 21,484,922 (-)NCBI
Rnor_5.01621,386,221 - 21,398,921 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252985   ⟹   XP_006253047
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,757,308 - 19,770,044 (-)NCBI
mRatBN7.21619,721,765 - 19,736,139 (-)NCBI
Rnor_6.01621,472,222 - 21,484,909 (-)NCBI
Rnor_5.01621,386,221 - 21,398,921 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017600347   ⟹   XP_017455836
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,757,308 - 19,770,051 (-)NCBI
mRatBN7.21619,721,765 - 19,736,139 (-)NCBI
Rnor_6.01621,472,222 - 21,484,916 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039095073   ⟹   XP_038951001
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81619,757,308 - 19,770,053 (-)NCBI
mRatBN7.21619,721,765 - 19,736,146 (-)NCBI
RefSeq Acc Id: XP_006253044   ⟸   XM_006252982
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006253047   ⟸   XM_006252985
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017455836   ⟸   XM_017600347
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000060023   ⟸   ENSRNOT00000066776
RefSeq Acc Id: XP_038951001   ⟸   XM_039095073
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000080092   ⟸   ENSRNOT00000111556
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LY33-F1-model_v2 AlphaFold F1LY33 1-381 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2318713 AgrOrtholog
BioCyc Gene G2FUF-11734 BioCyc
Ensembl Genes ENSRNOG00000042504 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066776.4 UniProtKB/TrEMBL
  ENSRNOT00000111556.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:100362170 UniProtKB/TrEMBL
NCBI Gene 100362170 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 882 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp964 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000042504 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I5ZSC3_RAT UniProtKB/TrEMBL
  A6KAC4 ENTREZGENE, UniProtKB/TrEMBL
  F1LY33 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-27 Zfp964  zinc finger protein 964  LOC100362170  rCG38872-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 LOC100362170  rCG38872-like      Symbol and Name status set to provisional 70820 PROVISIONAL