Tmem210 (transmembrane protein 210) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Tmem210 (transmembrane protein 210) Rattus norvegicus
Analyze
Symbol: Tmem210
Name: transmembrane protein 210
RGD ID: 2318321
Description: Predicted to be located in acrosomal vesicle. Orthologous to human TMEM210 (transmembrane protein 210); INTERACTS WITH bis(2-ethylhexyl) phthalate; genistein; thioacetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100362365; rCG45731-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,498,751 - 28,499,801 (+)NCBIGRCr8
GRCr8 Ensembl328,498,751 - 28,499,801 (+)EnsemblGRCr8 Ensembl
mRatBN7.238,100,595 - 8,101,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,100,590 - 8,101,643 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,205,115 - 11,206,165 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,791,345 - 19,792,395 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,981,188 - 17,982,238 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,504,674 - 2,505,708 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,504,694 - 2,505,666 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,486,068 - 2,487,079 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,450,725 - 3,451,697 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera32,927,151 - 2,928,185 (+)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
acrosomal vesicle  (IEA,ISO)
membrane  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Tmem210
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,498,751 - 28,499,801 (+)NCBIGRCr8
GRCr8 Ensembl328,498,751 - 28,499,801 (+)EnsemblGRCr8 Ensembl
mRatBN7.238,100,595 - 8,101,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,100,590 - 8,101,643 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,205,115 - 11,206,165 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,791,345 - 19,792,395 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,981,188 - 17,982,238 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,504,674 - 2,505,708 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,504,694 - 2,505,666 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,486,068 - 2,487,079 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,450,725 - 3,451,697 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera32,927,151 - 2,928,185 (+)NCBICelera
Cytogenetic Map3p13NCBI
TMEM210
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,170,858 - 137,172,056 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,170,858 - 137,172,056 (-)EnsemblGRCh38hg38GRCh38
GRCh379140,065,310 - 140,066,508 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,185,201 - 139,187,887 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map9q34.3NCBI
HuRef9109,525,327 - 109,526,513 (-)NCBIHuRef
CHM1_19140,214,008 - 140,215,185 (-)NCBICHM1_1
T2T-CHM13v2.09149,408,538 - 149,409,736 (-)NCBIT2T-CHM13v2.0
Tmem210
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,178,153 - 25,179,201 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,178,157 - 25,179,201 (+)EnsemblGRCm39 Ensembl
GRCm38225,288,145 - 25,289,187 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,288,145 - 25,289,189 (+)EnsemblGRCm38mm10GRCm38
MGSCv37225,143,665 - 25,144,707 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,110,154 - 25,111,192 (+)NCBIMGSCv36mm8
Celera225,015,655 - 25,016,697 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.13NCBI
Tmem210
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,180,542 - 5,181,488 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,180,542 - 5,181,488 (-)NCBIChiLan1.0ChiLan1.0
TMEM210
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,227,019 - 2,228,261 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,229,352 - 2,230,594 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,231,003 - 108,232,819 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,200,480 - 137,201,612 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,200,480 - 137,201,612 (-)Ensemblpanpan1.1panPan2
TMEM210
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,488,897 - 48,490,044 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,471,584 - 48,609,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,679,719 - 47,680,866 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,354,564 - 49,355,711 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,341,432 - 49,355,653 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,130,975 - 48,132,122 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,429,786 - 48,430,933 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,476,945 - 48,478,092 (+)NCBIUU_Cfam_GSD_1.0
Tmem210
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,562,766 - 202,564,389 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669811,343 - 812,248 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669809,032 - 812,274 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM210
(Sus scrofa - pig)		 No map positions available.
TMEM210
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,017,365 - 1,018,463 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl121,017,378 - 1,018,418 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660584,286,794 - 4,287,879 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Tmem210
4 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:38
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000061987
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3612543751125437Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
RH144153  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8328,499,868 - 28,500,048 (+)Marker Load Pipeline
mRatBN7.238,101,712 - 8,101,892 (+)MAPPERmRatBN7.2
Rnor_6.032,505,778 - 2,505,957NCBIRnor6.0
Rnor_5.032,487,191 - 2,487,370UniSTSRnor5.0
RGSC_v3.433,451,809 - 3,451,988UniSTSRGSC3.4
Celera32,928,255 - 2,928,434UniSTS
Cytogenetic Map3p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
7 2 1 29 17 17 7 3 7 1 21 5 28 31 10

Sequence


Ensembl Acc Id: ENSRNOT00000061987   ⟹   ENSRNOP00000058698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl328,498,751 - 28,499,801 (+)Ensembl
mRatBN7.2 Ensembl38,100,590 - 8,101,643 (+)Ensembl
Rnor_6.0 Ensembl32,504,694 - 2,505,666 (+)Ensembl
RefSeq Acc Id: NM_001399700   ⟹   NP_001386629
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,498,751 - 28,499,801 (+)NCBI
mRatBN7.238,100,595 - 8,101,645 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001386629 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL93616 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000058698
  ENSRNOP00000058698.2
GenBank Protein QGQ76739 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000058698   ⟸   ENSRNOT00000061987
RefSeq Acc Id: NP_001386629   ⟸   NM_001399700
- Peptide Label: precursor
- UniProtKB: F1LYD3 (UniProtKB/TrEMBL),   A6JT30 (UniProtKB/TrEMBL),   A0A650C5N9 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LYD3-F1-model_v2 AlphaFold F1LYD3 1-140 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691874
Promoter ID:EPDNEW_R2393
Type:initiation region
Name:Tmem210_1
Description:transmembrane protein 210
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.032,504,664 - 2,504,724EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2318321 AgrOrtholog
BioCyc Gene G2FUF-50464 BioCyc
Ensembl Genes ENSRNOG00000040275 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061987 ENTREZGENE
  ENSRNOT00000061987.3 UniProtKB/TrEMBL
InterPro TMEM210 UniProtKB/TrEMBL
NCBI Gene 100362365 ENTREZGENE
PANTHER PTHR39234 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 210 UniProtKB/TrEMBL
Pfam TMEM210 UniProtKB/TrEMBL
PhenoGen Tmem210 PhenoGen
RatGTEx ENSRNOG00000040275 RatGTEx
UniProt A0A650C5N9 ENTREZGENE, UniProtKB/TrEMBL
  A6JT30 ENTREZGENE, UniProtKB/TrEMBL
  F1LYD3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-27 Tmem210  transmembrane protein 210  LOC100362365  rCG45731-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-05 LOC100362365  rCG45731-like      Symbol and Name status set to provisional 70820 PROVISIONAL