Timm23-ps8 (translocase of inner mitochondrial membrane 23, pseudogene 8) - Rat Genome Database

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Gene: Timm23-ps8 (translocase of inner mitochondrial membrane 23, pseudogene 8) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Timm23-ps8
Name: translocase of inner mitochondrial membrane 23, pseudogene 8
RGD ID: 2318156
Description: Predicted to enable protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: LOC100362432; mitochondrial import inner membrane translocase subunit Tim23; mitochondrial import inner membrane translocase subunit Tim23-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Timm23  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83100,491,395 - 100,492,687 (+)NCBIGRCr8
mRatBN7.2380,036,051 - 80,037,343 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl380,036,240 - 80,036,869 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0382,970,785 - 82,971,887 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl168,324,036 - 8,350,067 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0389,672,283 - 89,673,354 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4378,482,490 - 78,483,119 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera379,236,956 - 79,238,058 (+)NCBICelera
Cytogenetic Map3q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Timm23-ps8
6 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)35318469289878207Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)353184593115665732Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)353184593115665732Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)364655305115665732Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)364655305115665732Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
731180Bp152Blood pressure QTL 1520.03arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35378111291609953Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)36113434889115068Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000026932   ⟹   ENSRNOP00000026932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl167,409,688 - 7,436,333 (-)Ensembl
Rnor_6.0 Ensembl168,324,036 - 8,350,067 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000051579   ⟹   ENSRNOP00000097164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl380,036,240 - 80,036,869 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095039   ⟹   ENSRNOP00000095080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl167,421,754 - 7,436,379 (-)Ensembl
RefSeq Acc Id: XM_002729199   ⟹   XP_002729245
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2380,036,157 - 80,037,243 (+)NCBI
Rnor_6.0382,970,785 - 82,971,887 (+)NCBI
Rnor_5.0389,672,283 - 89,673,354 (+)NCBI
RGSC_v3.4378,482,490 - 78,483,119 (+)RGD
Sequence:
Protein Sequences
GenBank Protein EDL79607 (Get FASTA)   NCBI Sequence Viewer  
  EDL88922 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000026932.3
  ENSRNOP00000095080.1
  ENSRNOP00000097164.1
RefSeq Acc Id: XP_002729245   ⟸   XM_002729199
- Sequence:
Ensembl Acc Id: ENSRNOP00000026932   ⟸   ENSRNOT00000026932
Ensembl Acc Id: ENSRNOP00000095080   ⟸   ENSRNOT00000095039
Ensembl Acc Id: ENSRNOP00000097164   ⟸   ENSRNOT00000051579

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2318156 AgrOrtholog
BioCyc Gene G2FUF-48657 BioCyc
Ensembl Genes ENSRNOG00000019811 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000032900 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026932.6 UniProtKB/TrEMBL
  ENSRNOT00000051579.2 UniProtKB/TrEMBL
  ENSRNOT00000095039.1 UniProtKB/TrEMBL
InterPro Tim23 UniProtKB/TrEMBL
  Tim23-like UniProtKB/TrEMBL
NCBI Gene 100362432 ENTREZGENE
PANTHER MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM23 UniProtKB/TrEMBL
  PTHR15371 UniProtKB/TrEMBL
Pfam Tim17 UniProtKB/TrEMBL
PhenoGen Timm23-ps8 PhenoGen
RatGTEx ENSRNOG00000019811 RatGTEx
  ENSRNOG00000032900 RatGTEx
UniProt A0A8I6AMB8_RAT UniProtKB/TrEMBL
  A0A8I6AW24_RAT UniProtKB/TrEMBL
  Q5XIW0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-14 Timm23-ps8  translocase of inner mitochondrial membrane 23, pseudogene 8  LOC100362432  mitochondrial import inner membrane translocase subunit Tim23-like  Name and Symbol and Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2010-05-05 LOC100362432  mitochondrial import inner membrane translocase subunit Tim23-like      Symbol and Name status set to provisional 70820 PROVISIONAL