Parpbp (PARP1 binding protein) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Parpbp (PARP1 binding protein) Rattus norvegicus
Analyze
Symbol: Parpbp
Name: PARP1 binding protein
RGD ID: 2314264
Description: Predicted to enable DNA binding activity. Predicted to be involved in negative regulation of double-strand break repair via homologous recombination. Predicted to be located in nucleoplasm. Predicted to be part of chromatin. Orthologous to human PARPBP (PARP1 binding protein); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: antisense RNA overlapping MCH; antisense RNA overlapping MCH gene protein; AROM; hypothetical protein LOC100310874; LOC100310874; PARI; PARP-1 binding protein; PARP1-binding protein; PCNA-interacting partner
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,398,897 - 24,468,330 (-)NCBIGRCr8
mRatBN7.2722,511,427 - 22,580,834 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl722,511,427 - 22,573,695 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx724,506,078 - 24,568,330 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0726,668,781 - 26,731,039 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0726,445,803 - 26,508,070 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0728,654,707 - 28,724,412 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl728,654,707 - 28,715,224 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0728,764,494 - 28,832,211 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4724,777,634 - 24,847,083 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera719,681,545 - 19,736,880 (-)NCBICelera
Cytogenetic Map7q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
17beta-estradiol  (EXP)
17beta-estradiol 3-benzoate  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-palmitoylglycerol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP,ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
azathioprine  (ISO)
azoxystrobin  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (EXP,ISO)
cobalt dichloride  (EXP,ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
dicrotophos  (ISO)
dioxygen  (EXP,ISO)
diquat  (ISO)
Enterolactone  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
furan  (EXP)
glyphosate  (EXP)
hydrogen peroxide  (ISO)
imidacloprid  (EXP)
indometacin  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (ISO)
thiabendazole  (EXP)
thimerosal  (ISO)
thiram  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
triptonide  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IBA,ISO,ISS)
cytoplasm  (IEA)
nucleoplasm  (ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11006283   PMID:22153967  


Genomics

Comparative Map Data
Parpbp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,398,897 - 24,468,330 (-)NCBIGRCr8
mRatBN7.2722,511,427 - 22,580,834 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl722,511,427 - 22,573,695 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx724,506,078 - 24,568,330 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0726,668,781 - 26,731,039 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0726,445,803 - 26,508,070 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0728,654,707 - 28,724,412 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl728,654,707 - 28,715,224 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0728,764,494 - 28,832,211 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4724,777,634 - 24,847,083 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera719,681,545 - 19,736,880 (-)NCBICelera
Cytogenetic Map7q13NCBI
PARPBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812102,120,183 - 102,197,520 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12102,120,183 - 102,197,520 (+)EnsemblGRCh38hg38GRCh38
GRCh3712102,513,961 - 102,591,298 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612101,038,086 - 101,115,428 (+)NCBINCBI36Build 36hg18NCBI36
Celera12102,177,976 - 102,255,257 (+)NCBICelera
Cytogenetic Map12q23.2NCBI
HuRef1299,573,544 - 99,650,766 (+)NCBIHuRef
CHM1_112102,480,622 - 102,557,963 (+)NCBICHM1_1
T2T-CHM13v2.012102,081,315 - 102,158,656 (+)NCBIT2T-CHM13v2.0
Parpbp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391087,927,260 - 87,982,831 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1087,927,294 - 87,982,803 (-)EnsemblGRCm39 Ensembl
GRCm381088,091,398 - 88,146,969 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,091,432 - 88,146,941 (-)EnsemblGRCm38mm10GRCm38
MGSCv371087,554,143 - 87,609,686 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361087,554,143 - 87,609,686 (-)NCBIMGSCv36mm8
Celera1090,076,046 - 90,124,027 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.7NCBI
Parpbp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540537,297,329 - 37,361,803 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540537,297,816 - 37,357,191 (+)NCBIChiLan1.0ChiLan1.0
PARPBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210110,193,534 - 110,270,852 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112110,189,912 - 110,267,250 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01299,707,641 - 99,784,993 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112103,105,104 - 103,182,366 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12103,105,117 - 103,182,366 (+)Ensemblpanpan1.1panPan2
PARPBP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11540,972,098 - 41,039,044 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1540,976,598 - 41,036,068 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1541,340,064 - 41,407,033 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01541,626,400 - 41,693,434 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1541,626,510 - 41,691,031 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11540,893,493 - 40,960,657 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01540,989,550 - 41,056,791 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01541,264,005 - 41,331,108 (+)NCBIUU_Cfam_GSD_1.0
Parpbp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494518,938,566 - 18,988,550 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649211,948,765 - 11,994,838 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649211,948,765 - 11,994,838 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PARPBP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,019,216 - 82,091,376 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,018,857 - 82,091,946 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2585,946,152 - 85,994,211 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PARPBP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11197,367,270 - 97,437,248 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1197,370,965 - 97,437,967 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037147,567,036 - 147,637,067 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Parpbp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247506,111,050 - 6,163,335 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247506,110,357 - 6,163,347 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Parpbp
406 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:562
Count of miRNA genes:174
Interacting mature miRNAs:212
Transcripts:ENSRNOT00000006249, ENSRNOT00000065899
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)71965431749753746Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72192119566921195Rat
1300176Hrtrt10Heart rate QTL 103.19heart pumping trait (VT:2000009)heart rate (CMO:0000002)766427026029351Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7532901950329019Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)7986646760460686Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7144822433Rat
10755438Coatc9Coat color QTL 90coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7352928048529280Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)7946224658265113Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7757398552573985Rat
2317047Wbc4White blood cell count QTL 40.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)7135342956Rat
10755440Coatc10Coat color QTL 100coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7749649952496499Rat
2298550Neuinf6Neuroinflammation QTL 63.3nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)7127829089Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)71965431749753746Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134000259Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)71965431752888450Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7131962314Rat
10755451Coatc11Coat color QTL 110coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)71794435762944357Rat
2317059Aia15Adjuvant induced arthritis QTL 152.46joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)71700459862004598Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7144782185Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)72055570529891047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7131962314Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)71579556538073970Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)71965431784928080Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)71903280735526300Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71557388960573889Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)71816950526029351Rat

Markers in Region
RH94549  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2722,513,064 - 22,513,234 (+)MAPPERmRatBN7.2
Rnor_6.0728,656,337 - 28,656,506NCBIRnor6.0
Rnor_5.0728,766,124 - 28,766,293UniSTSRnor5.0
RGSC_v3.4724,779,264 - 24,779,433UniSTSRGSC3.4
Celera719,683,175 - 19,683,344UniSTS
RH 3.4 Map7118.65UniSTS
Cytogenetic Map7q13UniSTS
RH137732  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2722,513,056 - 22,513,235 (+)MAPPERmRatBN7.2
Rnor_6.0728,656,329 - 28,656,507NCBIRnor6.0
Rnor_5.0728,766,116 - 28,766,294UniSTSRnor5.0
RGSC_v3.4724,779,256 - 24,779,434UniSTSRGSC3.4
Celera719,683,167 - 19,683,345UniSTS
RH 3.4 Map7120.2UniSTS
Cytogenetic Map7q13UniSTS
ha3298  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2181,184,930 - 81,186,620 (+)MAPPERmRatBN7.2
Rnor_6.0182,469,272 - 82,470,961NCBIRnor6.0
Rnor_6.0728,663,125 - 28,664,502NCBIRnor6.0
Rnor_5.0728,772,834 - 28,774,211UniSTSRnor5.0
Rnor_5.0183,730,780 - 83,732,469UniSTSRnor5.0
RGSC_v3.4180,883,899 - 80,885,588UniSTSRGSC3.4
Celera719,689,953 - 19,691,337UniSTS
Celera175,624,667 - 75,626,356UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 6 48 109 90 90 59 25 59 6 211 92 90 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF303035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000006174   ⟹   ENSRNOP00000006174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl722,511,427 - 22,556,911 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000006249   ⟹   ENSRNOP00000006249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl722,511,427 - 22,573,682 (-)Ensembl
Rnor_6.0 Ensembl728,654,733 - 28,711,761 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000065899   ⟹   ENSRNOP00000060859
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl722,511,435 - 22,573,688 (-)Ensembl
Rnor_6.0 Ensembl728,654,707 - 28,715,224 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096979   ⟹   ENSRNOP00000080570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl722,555,887 - 22,573,695 (-)Ensembl
RefSeq Acc Id: NM_001166676   ⟹   NP_001160148
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,398,905 - 24,461,156 (-)NCBI
mRatBN7.2722,511,435 - 22,573,688 (-)NCBI
Rnor_6.0728,654,707 - 28,715,224 (-)NCBI
Rnor_5.0728,764,494 - 28,832,211 (-)NCBI
RGSC_v3.4724,777,634 - 24,847,083 (-)RGD
Celera719,681,545 - 19,736,880 (-)RGD
Sequence:
RefSeq Acc Id: NM_001401236   ⟹   NP_001388165
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,398,897 - 24,461,156 (-)NCBI
mRatBN7.2722,511,427 - 22,573,688 (-)NCBI
RefSeq Acc Id: NM_001401237   ⟹   NP_001388166
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,398,897 - 24,461,156 (-)NCBI
mRatBN7.2722,511,427 - 22,573,688 (-)NCBI
RefSeq Acc Id: XM_006241189   ⟹   XP_006241251
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,398,897 - 24,468,328 (-)NCBI
mRatBN7.2722,512,241 - 22,580,834 (-)NCBI
Rnor_6.0728,655,513 - 28,724,412 (-)NCBI
Rnor_5.0728,764,494 - 28,832,211 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039078222   ⟹   XP_038934150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,398,897 - 24,443,994 (-)NCBI
mRatBN7.2722,512,241 - 22,556,563 (-)NCBI
RefSeq Acc Id: XM_039078223   ⟹   XP_038934151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,398,897 - 24,443,994 (-)NCBI
mRatBN7.2722,512,241 - 22,556,563 (-)NCBI
RefSeq Acc Id: XM_039078224   ⟹   XP_038934152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,409,836 - 24,443,994 (-)NCBI
mRatBN7.2722,522,371 - 22,556,563 (-)NCBI
RefSeq Acc Id: XM_063262830   ⟹   XP_063118900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,398,897 - 24,468,330 (-)NCBI
RefSeq Acc Id: XM_063262831   ⟹   XP_063118901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,398,897 - 24,443,387 (-)NCBI
RefSeq Acc Id: XM_063262832   ⟹   XP_063118902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,398,897 - 24,441,938 (-)NCBI
RefSeq Acc Id: XM_063262833   ⟹   XP_063118903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8724,444,880 - 24,461,187 (-)NCBI
RefSeq Acc Id: NP_001160148   ⟸   NM_001166676
- Peptide Label: isoform 3
- UniProtKB: A6IFN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241251   ⟸   XM_006241189
- Peptide Label: isoform X3
- UniProtKB: Q9EQ10 (UniProtKB/Swiss-Prot),   A6IFN0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006249   ⟸   ENSRNOT00000006249
Ensembl Acc Id: ENSRNOP00000060859   ⟸   ENSRNOT00000065899
RefSeq Acc Id: XP_038934151   ⟸   XM_039078223
- Peptide Label: isoform X2
- UniProtKB: G3V6L0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934150   ⟸   XM_039078222
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038934152   ⟸   XM_039078224
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000080570   ⟸   ENSRNOT00000096979
Ensembl Acc Id: ENSRNOP00000006174   ⟸   ENSRNOT00000006174
RefSeq Acc Id: NP_001388165   ⟸   NM_001401236
- Peptide Label: isoform 1
- UniProtKB: A0A0H2UHD2 (UniProtKB/TrEMBL),   A6IFN0 (UniProtKB/TrEMBL),   A6IFN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388166   ⟸   NM_001401237
- Peptide Label: isoform 2
- UniProtKB: Q9EQ10 (UniProtKB/Swiss-Prot),   A6IFN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118900   ⟸   XM_063262830
- Peptide Label: isoform X4
- UniProtKB: A6IFN0 (UniProtKB/TrEMBL),   A0A0H2UHD2 (UniProtKB/TrEMBL),   A6IFN1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118901   ⟸   XM_063262831
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063118902   ⟸   XM_063262832
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063118903   ⟸   XM_063262833
- Peptide Label: isoform X7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EQ10-F1-model_v2 AlphaFold Q9EQ10 1-573 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695122
Promoter ID:EPDNEW_R5647
Type:initiation region
Name:Parpbp_1
Description:PARP1 binding protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0728,715,227 - 28,715,287EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2314264 AgrOrtholog
BioCyc Gene G2FUF-34522 BioCyc
Ensembl Genes ENSRNOG00000004682 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055021645 UniProtKB/Swiss-Prot
  ENSRNOG00060022376 UniProtKB/Swiss-Prot
  ENSRNOG00065022855 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000006174.4 UniProtKB/TrEMBL
  ENSRNOT00000006249.6 UniProtKB/TrEMBL
  ENSRNOT00000065899.4 UniProtKB/Swiss-Prot
  ENSRNOT00000096979.1 UniProtKB/TrEMBL
  ENSRNOT00055037059 UniProtKB/Swiss-Prot
  ENSRNOT00060038853 UniProtKB/Swiss-Prot
  ENSRNOT00065039081 UniProtKB/Swiss-Prot
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PARPBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:100310874 UniProtKB/Swiss-Prot
NCBI Gene 100310874 ENTREZGENE
PANTHER PCNA-INTERACTING PARTNER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR32121 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Parpbp PhenoGen
RatGTEx ENSRNOG00000004682 RatGTEx
  ENSRNOG00055021645 RatGTEx
  ENSRNOG00060022376 RatGTEx
  ENSRNOG00065022855 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0H2UHD2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G6S9_RAT UniProtKB/TrEMBL
  A6IFN0 ENTREZGENE, UniProtKB/TrEMBL
  A6IFN1 ENTREZGENE, UniProtKB/TrEMBL
  A6IFN2 ENTREZGENE, UniProtKB/TrEMBL
  G3V6L0 ENTREZGENE, UniProtKB/TrEMBL
  PARI_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-19 Parpbp  PARP1 binding protein  LOC100310874  antisense RNA overlapping MCH  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-11-06 LOC100310874  antisense RNA overlapping MCH      Symbol and Name status set to provisional 70820 PROVISIONAL