Mir92b (microRNA 92b) - Rat Genome Database

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Gene: Mir92b (microRNA 92b) Mus musculus
Analyze
Symbol: Mir92b
Name: microRNA 92b
RGD ID: 2314075
MGI Page MGI
Description: Acts upstream of or within several processes, including cellular response to amino acid stimulus; cellular response to forskolin; and long-term synaptic potentiation. Is expressed in cerebral cortex; cerebral cortex subventricular zone; and cerebral cortex ventricular layer. Orthologous to human MIR92B (microRNA 92b).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: mir-92b; Mirn; Mirn92b; mmu-mir-9; mmu-mir-92b
RGD Orthologs
Human
Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,134,423 - 89,134,505 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,134,423 - 89,134,505 (-)EnsemblGRCm39 Ensembl
GRCm38389,227,116 - 89,227,198 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,227,116 - 89,227,198 (-)EnsemblGRCm38mm10GRCm38
MGSCv37389,031,038 - 89,031,120 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera389,261,008 - 89,261,090 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:17604727   PMID:18723672   PMID:20215419   PMID:20413612   PMID:20548288   PMID:21037258   PMID:21267068   PMID:21822254   PMID:21993888   PMID:23569256   PMID:24161931  
PMID:25858512   PMID:30578296   PMID:30880550   PMID:31283925   PMID:32273274   PMID:37867958   PMID:37985354  


Genomics

Comparative Map Data
Mir92b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,134,423 - 89,134,505 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,134,423 - 89,134,505 (-)EnsemblGRCm39 Ensembl
GRCm38389,227,116 - 89,227,198 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,227,116 - 89,227,198 (-)EnsemblGRCm38mm10GRCm38
MGSCv37389,031,038 - 89,031,120 (-)NCBIGRCm37MGSCv37mm9NCBIm37
Celera389,261,008 - 89,261,090 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.02NCBI
MIR92B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381155,195,177 - 155,195,272 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1155,195,177 - 155,195,272 (+)EnsemblGRCh38hg38GRCh38
GRCh371155,164,968 - 155,165,063 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera1128,238,250 - 128,238,345 (+)NCBICelera
Cytogenetic Map1q22NCBI
HuRef1126,528,072 - 126,528,167 (+)NCBIHuRef
CHM1_11156,560,475 - 156,560,570 (+)NCBICHM1_1
T2T-CHM13v2.01154,333,740 - 154,333,835 (+)NCBIT2T-CHM13v2.0
Mir92b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82176,931,653 - 176,931,735 (-)NCBIGRCr8
mRatBN7.22174,633,890 - 174,633,972 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2174,633,890 - 174,633,972 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2181,779,778 - 181,779,860 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02179,802,150 - 179,802,232 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02174,401,958 - 174,402,040 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02188,541,034 - 188,541,116 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2188,541,034 - 188,541,116 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02207,955,680 - 207,955,762 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2168,576,266 - 168,576,348 (-)NCBICelera
Cytogenetic Map2q34NCBI

Variants

.
Variants in Mir92b
3 total Variants
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:18531
Count of gene targets:8980
Count of transcripts:15087
Interacting mature miRNAs:mmu-miR-92b-3p, mmu-miR-92b-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
10043981Cia5a_mcollagen induced arthritis QTL 5a (mouse)Not determined38717045489140094Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000102300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,134,423 - 89,134,505 (-)Ensembl
GRCm38.p6 Ensembl389,227,116 - 89,227,198 (-)Ensembl
RefSeq Acc Id: NR_030579
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39389,134,423 - 89,134,505 (-)NCBI
GRCm38389,227,116 - 89,227,198 (-)ENTREZGENE
MGSCv37389,031,038 - 89,031,120 (-)RGD
Celera389,261,008 - 89,261,090 (-)RGD
cM Map3 ENTREZGENE
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3718577 AgrOrtholog
Ensembl Genes ENSMUSG00000076255 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000102300 ENTREZGENE
MGD MGI:3718577 ENTREZGENE
miRBase MI0005521 ENTREZGENE
NCBI Gene 100124470 ENTREZGENE
PhenoGen Mir92b PhenoGen
RNAcentral URS000025576D RNACentral
  URS000045C922 RNACentral
  URS000075CA49 RNACentral