Aqp10-ps (aquaporin 10, pseudogene) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Aqp10-ps (aquaporin 10, pseudogene) Mus musculus
Analyze
Symbol: Aqp10-ps
Name: aquaporin 10, pseudogene
RGD ID: 2313448
MGI Page MGI
Description: ENCODES a pseudogene that exhibits glycerol channel activity (ortholog); water channel activity (ortholog); INVOLVED IN cellular response to acidic pH (ortholog); glycerol transmembrane transport (ortholog); protein homotetramerization (ortholog); PARTICIPATES IN water transport pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); dyschromatosis symmetrica hereditaria (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN intracellular membrane-bounded organelle (ortholog); plasma membrane (ortholog); INTERACTS WITH triptonide; all-trans-retinoic acid (ortholog); ammonium hexachloroplatinate (ortholog)
Type: pseudo (Ensembl: unitary_pseudogene)
RefSeq Status: INFERRED
Previously known as: AQP10p; EG668102; Gm8977; predicted gene 8977
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,870,751 - 89,877,041 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,872,016 - 89,875,998 (-)EnsemblGRCm39 Ensembl
GRCm38389,963,444 - 89,969,734 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,964,709 - 89,968,658 (-)EnsemblGRCm38mm10GRCm38
MGSCv37389,767,366 - 89,773,656 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,091,325 - 90,092,558 (-)NCBIMGSCv36mm8
Celera389,999,953 - 90,006,243 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.19NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:12056815   PMID:14610273   PMID:19367412   PMID:19521566  


Genomics

Comparative Map Data
Aqp10-ps
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39389,870,751 - 89,877,041 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl389,872,016 - 89,875,998 (-)EnsemblGRCm39 Ensembl
GRCm38389,963,444 - 89,969,734 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl389,964,709 - 89,968,658 (-)EnsemblGRCm38mm10GRCm38
MGSCv37389,767,366 - 89,773,656 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,091,325 - 90,092,558 (-)NCBIMGSCv36mm8
Celera389,999,953 - 90,006,243 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.19NCBI
AQP10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381154,321,093 - 154,325,325 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1154,321,090 - 154,325,325 (+)EnsemblGRCh38hg38GRCh38
GRCh371154,293,569 - 154,297,801 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361152,560,216 - 152,564,425 (+)NCBINCBI36Build 36hg18NCBI36
Build 341151,106,664 - 151,110,873NCBI
Celera1127,365,303 - 127,369,516 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1125,657,284 - 125,661,501 (+)NCBIHuRef
CHM1_11155,689,895 - 155,694,130 (+)NCBICHM1_1
T2T-CHM13v2.01153,458,259 - 153,462,492 (+)NCBIT2T-CHM13v2.0
Aqp10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82177,699,717 - 177,704,620 (-)NCBIGRCr8
mRatBN7.22175,402,609 - 175,407,677 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2175,403,263 - 175,406,815 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02189,309,151 - 189,314,092 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02208,732,677 - 208,734,879 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2169,344,930 - 169,349,241 (-)NCBICelera
Cytogenetic Map2q34NCBI
Aqp10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545845,749 - 848,738 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955545845,749 - 848,738 (+)NCBIChiLan1.0ChiLan1.0
AQP10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2195,506,299 - 95,511,820 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,241,532 - 95,247,053 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01129,677,969 - 129,682,681 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11133,291,027 - 133,295,265 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1133,291,027 - 133,295,265 (+)Ensemblpanpan1.1panPan2
AQP10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1742,961,041 - 42,964,053 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,451,365 - 42,454,540 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0742,830,882 - 42,834,057 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl742,830,139 - 42,833,937 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1742,609,750 - 42,613,405 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0742,663,571 - 42,666,669 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0742,947,589 - 42,950,761 (-)NCBIUU_Cfam_GSD_1.0
Aqp10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,950,993 - 24,954,469 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,980,659 - 3,984,394 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,981,254 - 3,984,895 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AQP10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl495,450,150 - 95,453,256 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1495,449,268 - 95,453,663 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,328,003 - 104,332,534 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AQP10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1209,489,562 - 9,506,229 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl209,492,846 - 9,496,367 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660388,845,092 - 8,858,410 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aqp10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,014,351 - 3,022,248 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,014,853 - 3,032,920 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Aqp10-ps
195 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301971Cia5_mcollagen induced arthritis QTL 5 (mouse)Not determined366046658100046795Mouse
4142399Aec1_mautoimmune exocrinopathy 1 (mouse)Not determined7586174102690034Mouse
26884378Skwq6_mskull length QTL 6, 10 week (mouse)351907421102307316Mouse
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
1301392Eae3_msusceptibility to experimental allergic encephalomyelitis 3 (mouse)Not determined379548730113548837Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
26884380Skwq1_mskull length QTL 1, 5 week (mouse)343954435101607316Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301791Char4_mP. chabaudi malaria resistance QTL 4 (mouse)Not determined369625509100655290Mouse
11049572Lmr11c_mleishmaniasis resistance 11c (mouse)372139967106140094Mouse
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
4141294Bmd24_mbone mineral density 24 (mouse)Not determined36174006195740241Mouse
26884427Cvht4_mcranial vault height 4, 10 week (mouse)316054164109707316Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
1300595Tmevd2_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 2 (mouse)Not determined375463302109463549Mouse
11251721Ewc3_methanol withdrawal and consumption 3 (mouse)369568554103568554Mouse
1300982Lmr11_mleishmaniasis resistance 11 (mouse)Not determined372139967106140094Mouse
12880419V125Dq4_mvitamin D active form serum level QTL 4 (mouse)35890730792907307Mouse
1301947Pcfm3_mperiosteal circumference and femur length 3 (mouse)Not determined381084652115084797Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
11039519Ltpr3_mLeishmania tropica response 3 (mouse)356704102100464137Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
1301422Sle11_msystematic lupus erythematosus susceptibility 11 (mouse)Not determined370208904104209042Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
13208566Bmiq5_mbody mass index QTL 5 (mouse)340954435115793649Mouse

Markers in Region
Aqp10-ps  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F1UniSTS
cM Map339.19UniSTS


Expression


Sequence


Ensembl Acc Id: ENSMUST00000199555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl389,872,016 - 89,875,998 (-)Ensembl
GRCm38.p6 Ensembl389,964,709 - 89,968,658 (-)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000105082 Ensembl
MGD MGI:4356425 ENTREZGENE
NCBI Gene 435743 ENTREZGENE
PhenoGen Aqp10-ps PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-02 Aqp10-ps  aquaporin 10, pseudogene  Gm8977  predicted gene 8977  Data merged from RGD:2310224 737654 PROVISIONAL