Smim38 (small integral membrane protein 38) - Rat Genome Database

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Gene: Smim38 (small integral membrane protein 38) Mus musculus
Analyze
Symbol: Smim38
Name: small integral membrane protein 38
RGD ID: 2299665
MGI Page MGI
Description: Predicted to be located in membrane. Orthologous to human SMIM38 (small integral membrane protein 38).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 100040049; 1810010D01Rik; Gm2572; RIKEN cDNA 1810010D01; RIKEN cDNA 1810010D01 gene
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397144,759,560 - 144,761,856 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7144,759,562 - 144,761,856 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm387145,205,823 - 145,208,119 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7145,205,825 - 145,208,119 (-)Ensemblmm10GRCm38
MGSCv377152,391,723 - 152,394,024 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv367152,392,293 - 152,394,024 (-)NCBIMGSCv36mm8
Celera7144,973,820 - 144,976,121 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.99NCBI
JBrowse:




References
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073  


Genomics

Comparative Map Data
Smim38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397144,759,560 - 144,761,856 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7144,759,562 - 144,761,856 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm387145,205,823 - 145,208,119 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7145,205,825 - 145,208,119 (-)Ensemblmm10GRCm38
MGSCv377152,391,723 - 152,394,024 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv367152,392,293 - 152,394,024 (-)NCBIMGSCv36mm8
Celera7144,973,820 - 144,976,121 (-)NCBICelera
Cytogenetic Map7F5NCBI
cM Map788.99NCBI
SMIM38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381169,155,573 - 69,162,440 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1169,155,478 - 69,162,440 (+)Ensemblhg38GRCh38
GRCh371168,923,041 - 68,929,908 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11q13.3NCBI
CHM1_11168,786,545 - 68,814,232 (+)NCBICHM1_1
T2T-CHM13v2.01169,167,904 - 69,174,769 (+)NCBIT2T-CHM13v2.0
Smim38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81209,795,854 - 209,801,269 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1209,795,854 - 209,801,269 (-)EnsemblGRCr8
mRatBN7.21200,366,561 - 200,371,976 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1208,742,278 - 208,747,693 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,828,593 - 215,834,008 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01208,502,815 - 208,508,230 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01218,369,204 - 218,374,619 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1218,369,204 - 218,374,619 (-)Ensemblrn6Rnor6.0
Rnor_5.01225,236,071 - 225,241,739 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41205,652,988 - 205,658,404 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1197,921,301 - 197,926,716 (-)NCBICelera
RGSC_v3.11205,806,440 - 205,811,857 (-)NCBI
Cytogenetic Map1q42NCBI
SMIM38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2970,116,978 - 70,123,519 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11171,159,942 - 71,166,475 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01164,246,628 - 64,254,155 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
SMIM38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1847,513,433 - 47,513,656 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01849,580,794 - 49,581,017 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11849,026,834 - 49,027,057 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01848,613,243 - 48,613,466 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01849,359,749 - 49,359,972 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Smim38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049474,832,344 - 4,836,429 (-)NCBIHiC_Itri_2
SMIM38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666038102,697,812 - 102,700,476 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smim38
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v124,529,547 - 4,530,048 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Smim38
47 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1301590Pbwg3_mpostnatal body weight growth 3 (mouse)Not determined7127311241144995196Mouse
1300566Sluc8_msusceptibility to lung cancer 8 (mouse)Not determined7127398151144995196Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
14746988Manh63_mmandible shape 63 (mouse)7127735437144995196Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000207703
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7144,760,126 - 144,760,919 (-)Ensembl
GRCm38.p6 Ensembl7145,206,389 - 145,207,182 (-)Ensembl
Ensembl Acc Id: ENSMUST00000207841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7144,760,493 - 144,761,856 (-)Ensembl
GRCm38.p6 Ensembl7145,206,756 - 145,208,119 (-)Ensembl
Ensembl Acc Id: ENSMUST00000208264
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7144,760,102 - 144,761,854 (-)Ensembl
GRCm38.p6 Ensembl7145,206,365 - 145,208,117 (-)Ensembl
Ensembl Acc Id: ENSMUST00000208788   ⟹   ENSMUSP00000149353
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7144,759,562 - 144,761,817 (-)Ensembl
GRCm38.p6 Ensembl7145,205,825 - 145,208,080 (-)Ensembl
RefSeq Acc Id: NM_001369202   ⟹   NP_001356131
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397144,759,560 - 144,761,856 (-)NCBI
GRCm387145,205,823 - 145,208,119 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001356131 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000149353
  ENSMUSP00000149353.2
RefSeq Acc Id: NP_001356131   ⟸   NM_001369202
- UniProtKB: A0A1L1SR87 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000149353   ⟸   ENSMUST00000208788

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A1L1SR87-F1-model_v2 AlphaFold A0A1L1SR87 1-51 view protein structure

Promoters
RGD ID:6840241
Promoter ID:MM_KWN:53451
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:AK007416_1810010D01RIK,   UC009KQU.1,   XM_001479885_GM2572
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367152,393,751 - 152,394,251 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916283 AgrOrtholog
Ensembl Genes ENSMUSG00000109305 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000208788 ENTREZGENE
  ENSMUST00000208788.2 UniProtKB/TrEMBL
MGD MGI:1916283 ENTREZGENE
NCBI Gene Smim38 ENTREZGENE
PhenoGen Smim38 PhenoGen
UniProt A0A1L1SR87 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-07-22 Smim38  small integral membrane protein 38  1810010D01Rik  RIKEN cDNA 1810010D01 gene  Symbol and/or name change 5135510 APPROVED
2025-07-22 1810010D01Rik  RIKEN cDNA 1810010D01 gene  Smim38  small integral membrane protein 38  Symbol and/or name change 5135510 APPROVED
2024-08-21 Smim38  small integral membrane protein 38  1810010D01Rik  RIKEN cDNA 1810010D01 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 1810010D01Rik  RIKEN cDNA 1810010D01 gene  Smim38  small integral membrane protein 38  Symbol and/or name change 5135510 APPROVED
2019-04-16 Smim38  small integral membrane protein 38  1810010D01Rik  RIKEN cDNA 1810010D01 gene  Symbol and/or name change 5135510 APPROVED
2014-09-17 1810010D01Rik  RIKEN cDNA 1810010D01 gene  Gm2572  predicted gene 2572  Symbol and/or name change 5135510 APPROVED