Krtap4-25 (keratin associated protein 4-25) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Krtap4-25 (keratin associated protein 4-25) Mus musculus
Analyze
Symbol: Krtap4-25 (Ensembl: Gm11563)
Name: keratin associated protein 4-25 (Ensembl:predicted gene 11563)
RGD ID: 2295075
MGI Page MGI
Description: Orthologous to several human genes including KRTAP4-8 (keratin associated protein 4-8).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310045F10Rik; Gm11563; keratin associated protein 4-like
RGD Orthologs
Human
Rat
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391199,548,768 - 99,549,785 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1199,548,775 - 99,549,786 (-)EnsemblGRCm39 Ensembl
GRCm381199,657,942 - 99,658,959 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1199,657,949 - 99,658,960 (-)EnsemblGRCm38mm10GRCm38
MGSCv371199,519,256 - 99,520,273 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361199,519,734 - 99,520,280NCBIMGSCv36mm8
Cytogenetic Map11DNCBI
cM Map1163.0NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11217851   PMID:12466851  


Genomics

Comparative Map Data
Krtap4-25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391199,548,768 - 99,549,785 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1199,548,775 - 99,549,786 (-)EnsemblGRCm39 Ensembl
GRCm381199,657,942 - 99,658,959 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1199,657,949 - 99,658,960 (-)EnsemblGRCm38mm10GRCm38
MGSCv371199,519,256 - 99,520,273 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361199,519,734 - 99,520,280NCBIMGSCv36mm8
Cytogenetic Map11DNCBI
cM Map1163.0NCBI
KRTAP4-8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381741,096,981 - 41,098,142 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1741,096,981 - 41,098,142 (-)EnsemblGRCh38hg38GRCh38
GRCh371739,253,233 - 39,254,394 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361736,507,305 - 36,507,862 (-)NCBINCBI36Build 36hg18NCBI36
Celera1735,915,120 - 35,916,293 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1735,047,600 - 35,048,848 (-)NCBIHuRef
CHM1_11739,488,595 - 39,489,737 (-)NCBICHM1_1
T2T-CHM13v2.01741,961,756 - 41,962,929 (-)NCBIT2T-CHM13v2.0
Krtap4-3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81085,252,776 - 85,268,638 (-)NCBIGRCr8
mRatBN7.21084,752,173 - 84,790,523 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1084,789,628 - 84,790,527 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01087,714,750 - 87,731,249 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1087,586,472 - 87,753,700 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01087,542,322 - 87,542,888 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41088,787,902 - 88,788,468 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1083,472,503 - 83,478,864 (-)NCBICelera
Cytogenetic Map10q31NCBI
LOC100979458
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21923,854,647 - 23,857,005 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11725,745,096 - 25,747,454 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01716,186,989 - 16,188,938 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11716,402,655 - 16,406,092 (+)NCBIpanpan1.1PanPan1.1panPan2

Variants

.
Variants in Krtap4-25
43 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:142
Count of miRNA genes:132
Interacting mature miRNAs:136
Transcripts:ENSMUST00000092695
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301535Pas5b_mpulmonary adenoma susceptibility 5b (mouse)Not determined1196176465108806384Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
12910539Sstapa3_msuseptibility to Staphylococcus aureus infection 3 (mouse)1196897693110603991Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
10045617Heal26_mwound healing/regeneration 26 (mouse)Not determined1192939373112544554Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1357631Motr1_mmodifier of tubby retinal degeneration 1 (mouse)Not determined1187691198103274115Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001126320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL590997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000092695   ⟹   ENSMUSP00000090369
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1199,548,775 - 99,549,786 (-)Ensembl
GRCm38.p6 Ensembl1199,657,949 - 99,658,960 (-)Ensembl
RefSeq Acc Id: NM_001126320   ⟹   NP_001119792
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391199,548,768 - 99,549,785 (-)NCBI
GRCm381199,657,942 - 99,658,959 (-)ENTREZGENE
MGSCv371199,519,256 - 99,520,273 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001119792 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000090369
  ENSMUSP00000090369.4
RefSeq Acc Id: NP_001119792   ⟸   NM_001126320
- UniProtKB: B1AQ90 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000090369   ⟸   ENSMUST00000092695

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B1AQ90-F1-model_v2 AlphaFold B1AQ90 1-168 view protein structure

Promoters
RGD ID:8676608
Promoter ID:EPDNEW_M16335
Type:single initiation site
Name:Gm11563_1
Description:Mus musculus predicted gene 11563 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381199,658,982 - 99,659,042EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3650330 AgrOrtholog
Ensembl Genes ENSMUSG00000069718 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000092695 ENTREZGENE
  ENSMUST00000092695.5 UniProtKB/TrEMBL
InterPro Keratin_B2 UniProtKB/TrEMBL
KEGG Report mmu:100040248 UniProtKB/TrEMBL
MGD MGI:3650330 ENTREZGENE
NCBI Gene 100040248 ENTREZGENE
PANTHER KERATIN-ASSOCIATED PROTEIN 4-11-RELATED UniProtKB/TrEMBL
  Keratin_B2 UniProtKB/TrEMBL
Pfam Keratin_B2_2 UniProtKB/TrEMBL
PhenoGen Krtap4-25 PhenoGen
UniProt B1AQ90 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-02-19 Krtap4-25  keratin associated protein 4-25  Gm11563  predicted gene 11563  Symbol and/or name updated 27372883 PROVISIONAL