Phykpl (5-phosphohydroxy-L-lysine phospho-lyase) - Rat Genome Database

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Gene: Phykpl (5-phosphohydroxy-L-lysine phospho-lyase) Rattus norvegicus
Analyze
Symbol: Phykpl
Name: 5-phosphohydroxy-L-lysine phospho-lyase
RGD ID: 2293818
Description: Predicted to enable identical protein binding activity. Predicted to be located in mitochondrion. Orthologous to human PHYKPL (5-phosphohydroxy-L-lysine phospho-lyase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Agxt2l2; alanine--glyoxylate aminotransferase 2-like 2; alanine-glyoxylate aminotransferase 2-like 2; LOC102547782; MGC188042; uncharacterized LOC102547782
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21035,839,965 - 35,863,631 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1035,839,983 - 35,859,508 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1040,534,492 - 40,551,956 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01040,024,784 - 40,042,248 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01035,528,191 - 35,545,657 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01034,938,661 - 34,960,661 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,938,667 - 34,960,840 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01036,804,284 - 36,826,629 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41037,100,238 - 37,117,744 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1035,196,736 - 35,214,241 (+)NCBICelera
Cytogenetic Map10q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15632090   PMID:16189514   PMID:18614015   PMID:21873635   PMID:25416956   PMID:31515488  


Genomics

Comparative Map Data
Phykpl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21035,839,965 - 35,863,631 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1035,839,983 - 35,859,508 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1040,534,492 - 40,551,956 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01040,024,784 - 40,042,248 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01035,528,191 - 35,545,657 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01034,938,661 - 34,960,661 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,938,667 - 34,960,840 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01036,804,284 - 36,826,629 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41037,100,238 - 37,117,744 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1035,196,736 - 35,214,241 (+)NCBICelera
Cytogenetic Map10q22NCBI
PHYKPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385178,207,144 - 178,232,822 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5178,208,471 - 178,232,802 (-)EnsemblGRCh38hg38GRCh38
GRCh375177,635,472 - 177,659,823 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365177,568,196 - 177,592,392 (-)NCBINCBI36Build 36hg18NCBI36
Celera5173,262,527 - 173,286,791 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5172,361,764 - 172,386,111 (-)NCBIHuRef
CHM1_15177,067,898 - 177,092,260 (-)NCBICHM1_1
T2T-CHM13v2.05178,758,757 - 178,783,105 (-)NCBIT2T-CHM13v2.0
Phykpl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391151,474,751 - 51,494,091 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1151,475,584 - 51,495,316 (+)EnsemblGRCm39 Ensembl
GRCm381151,584,654 - 51,603,264 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1151,584,757 - 51,604,489 (+)EnsemblGRCm38mm10GRCm38
MGSCv371151,398,259 - 51,416,771 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361151,428,226 - 51,446,460 (+)NCBIMGSCv36mm8
Celera1156,156,087 - 56,174,597 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1131.08NCBI
Phykpl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554082,038,169 - 2,060,570 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554082,038,168 - 2,062,681 (+)NCBIChiLan1.0ChiLan1.0
PHYKPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan15171,293,532 - 171,316,242 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05173,368,383 - 173,394,377 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15180,625,530 - 180,651,618 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5180,625,530 - 180,651,618 (-)Ensemblpanpan1.1panPan2
PHYKPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1113,324,035 - 3,358,070 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl113,323,722 - 3,358,063 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha113,467,553 - 3,502,530 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0113,300,232 - 3,335,214 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl113,300,207 - 3,334,260 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1113,270,668 - 3,305,644 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0113,351,973 - 3,386,962 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0113,590,559 - 3,625,548 (+)NCBIUU_Cfam_GSD_1.0
Phykpl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213113,455,212 - 113,478,355 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936647458,052 - 478,747 (+)EnsemblSpeTri2.0
SpeTri2.0NW_004936647456,633 - 480,711 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHYKPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl280,142,033 - 80,191,957 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1280,142,273 - 80,188,753 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2281,754,503 - 81,800,963 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHYKPL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12379,900,615 - 79,926,879 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2379,898,807 - 79,926,305 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607511,199,321 - 11,226,259 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phykpl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473341,398,602 - 41,425,649 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473341,402,276 - 41,425,635 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Phykpl
57 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
631531Iresp2Immunoglobin response QTL26.3blood immunoglobulin E amount (VT:0002492)serum total immunoglobulin E level (CMO:0001542)102291826836400810Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)103449055945579777Rat
1354614Hpcl1Hepatic cholesterol level QTL 13.3liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)103539226751793994Rat
1358897Stresp6Stress response QTL 64.170.022blood norepinephrine amount (VT:0005663)plasma norepinephrine level (CMO:0001010)103539226764155584Rat
61441Btemp1Thermal response to stress QTL 14body temperature trait (VT:0005535)core body temperature (CMO:0001036)103539245763642539Rat

Markers in Region
RH134157  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21035,838,831 - 35,839,016 (+)MAPPERmRatBN7.2
Rnor_6.01037,030,880 - 37,031,064NCBIRnor6.0
Rnor_6.01034,937,506 - 34,937,690NCBIRnor6.0
Rnor_5.01036,803,162 - 36,803,346UniSTSRnor5.0
Rnor_5.01034,709,854 - 34,710,038UniSTSRnor5.0
RGSC_v3.41037,099,075 - 37,099,259UniSTSRGSC3.4
Celera1035,195,573 - 35,195,757UniSTS
RH 3.4 Map10386.0UniSTS
RH138480  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21035,856,612 - 35,856,776 (+)MAPPERmRatBN7.2
Rnor_6.01037,048,973 - 37,049,136NCBIRnor6.0
Rnor_6.01034,955,287 - 34,955,450NCBIRnor6.0
Rnor_5.01036,821,255 - 36,821,418UniSTSRnor5.0
Rnor_5.01034,727,633 - 34,727,796UniSTSRnor5.0
RGSC_v3.41037,116,856 - 37,117,019UniSTSRGSC3.4
Celera1035,213,353 - 35,213,516UniSTS
RH 3.4 Map10386.5UniSTS
Cytogenetic Map10q22UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000037303   ⟹   ENSRNOP00000036405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1035,839,983 - 35,857,501 (+)Ensembl
Rnor_6.0 Ensembl1037,032,043 - 37,049,858 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000059104   ⟹   ENSRNOP00000055878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1035,839,983 - 35,857,055 (+)Ensembl
Rnor_6.0 Ensembl1034,938,691 - 34,956,038 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086443   ⟹   ENSRNOP00000071887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1035,839,983 - 35,857,381 (+)Ensembl
Rnor_6.0 Ensembl1034,938,667 - 34,960,840 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000091242   ⟹   ENSRNOP00000075670
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1035,839,983 - 35,856,677 (+)Ensembl
Rnor_6.0 Ensembl1037,032,056 - 37,051,519 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105114   ⟹   ENSRNOP00000092306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1035,840,612 - 35,859,508 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109370   ⟹   ENSRNOP00000094939
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1035,839,983 - 35,857,381 (+)Ensembl
RefSeq Acc Id: NM_001128196   ⟹   NP_001121668
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21035,839,995 - 35,857,501 (+)NCBI
Rnor_6.01034,938,669 - 34,956,175 (+)NCBI
Rnor_5.01036,804,284 - 36,826,629 (+)NCBI
RGSC_v3.41037,100,238 - 37,117,744 (+)RGD
Celera1035,196,736 - 35,214,241 (+)RGD
Sequence:
RefSeq Acc Id: XM_008767648   ⟹   XP_008765870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21035,839,965 - 35,860,511 (+)NCBI
Rnor_6.01034,938,661 - 34,959,185 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767649   ⟹   XP_008765871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21035,839,965 - 35,861,556 (+)NCBI
Rnor_6.01034,938,661 - 34,960,181 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767651   ⟹   XP_008765873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21035,839,965 - 35,860,511 (+)NCBI
Rnor_6.01034,938,661 - 34,959,185 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767652   ⟹   XP_008765874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21035,839,965 - 35,862,617 (+)NCBI
Rnor_6.01034,938,661 - 34,960,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039084982   ⟹   XP_038940910
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21035,839,965 - 35,860,511 (+)NCBI
RefSeq Acc Id: XM_039084983   ⟹   XP_038940911
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21035,839,965 - 35,857,501 (+)NCBI
RefSeq Acc Id: XR_005489653
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21035,839,965 - 35,863,631 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001121668   ⟸   NM_001128196
- UniProtKB: A0A8J8XD81 (UniProtKB/TrEMBL),   B0BNC4 (UniProtKB/TrEMBL),   D3ZFL7 (UniProtKB/TrEMBL),   F1LMP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765874   ⟸   XM_008767652
- Peptide Label: isoform X7
- UniProtKB: A0A0G2KB65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765871   ⟸   XM_008767649
- Peptide Label: isoform X5
- UniProtKB: A0A8J8XD85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765870   ⟸   XM_008767648
- Peptide Label: isoform X4
- UniProtKB: A0A0G2KB65 (UniProtKB/TrEMBL),   A0A8J8XD85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765873   ⟸   XM_008767651
- Peptide Label: isoform X6
- UniProtKB: A0A0G2KB65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000071887   ⟸   ENSRNOT00000086443
RefSeq Acc Id: ENSRNOP00000055878   ⟸   ENSRNOT00000059104
RefSeq Acc Id: XP_038940910   ⟸   XM_039084982
- Peptide Label: isoform X1
- UniProtKB: A0A8J8XD85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940911   ⟸   XM_039084983
- Peptide Label: isoform X3
- UniProtKB: A0A0G2K1L2 (UniProtKB/TrEMBL),   A0A8J8XD85 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000036405   ⟸   ENSRNOT00000037303
RefSeq Acc Id: ENSRNOP00000075670   ⟸   ENSRNOT00000091242
RefSeq Acc Id: ENSRNOP00000092306   ⟸   ENSRNOT00000105114
RefSeq Acc Id: ENSRNOP00000094939   ⟸   ENSRNOT00000109370

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BNC4-F1-model_v2 AlphaFold B0BNC4 1-476 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2293818 AgrOrtholog
BioCyc Gene G2FUF-25199 BioCyc
Ensembl Genes ENSRNOG00000047933 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000048357 Ensembl
Ensembl Protein ENSRNOP00000036405 ENTREZGENE
  ENSRNOP00000036405.5 UniProtKB/TrEMBL
  ENSRNOP00000055878 ENTREZGENE
  ENSRNOP00000055878.4 UniProtKB/TrEMBL
  ENSRNOP00000071887 ENTREZGENE
  ENSRNOP00000071887.2 UniProtKB/TrEMBL
  ENSRNOP00000075670.2 UniProtKB/TrEMBL
  ENSRNOP00000092306 ENTREZGENE
  ENSRNOP00000092306.1 UniProtKB/TrEMBL
  ENSRNOP00000094939.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037303 ENTREZGENE
  ENSRNOT00000037303.6 UniProtKB/TrEMBL
  ENSRNOT00000059104 ENTREZGENE
  ENSRNOT00000059104.5 UniProtKB/TrEMBL
  ENSRNOT00000086443 ENTREZGENE
  ENSRNOT00000086443.2 UniProtKB/TrEMBL
  ENSRNOT00000091242.2 UniProtKB/TrEMBL
  ENSRNOT00000105114 ENTREZGENE
  ENSRNOT00000105114.1 UniProtKB/TrEMBL
  ENSRNOT00000109370.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.640.10 UniProtKB/TrEMBL
  3.90.1150.10 UniProtKB/TrEMBL
InterPro Aminotrans_3 UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major_dom UniProtKB/TrEMBL
  PyrdxlP-dep_Trfase_major_sub2 UniProtKB/TrEMBL
KEGG Report rno:100169747 UniProtKB/TrEMBL
NCBI Gene 100169747 ENTREZGENE
PANTHER 5-PHOSPHOHYDROXY-L-LYSINE PHOSPHO-LYASE UniProtKB/TrEMBL
  PTHR45688 UniProtKB/TrEMBL
Pfam Aminotran_3 UniProtKB/TrEMBL
PhenoGen Phykpl PhenoGen
PIRSF Transaminase_4ab_Lys_Orn UniProtKB/TrEMBL
PROSITE AA_TRANSFER_CLASS_3 UniProtKB/TrEMBL
Superfamily-SCOP PyrdxlP-dep_Trfase_major UniProtKB/TrEMBL
UniProt A0A0G2K1L2 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2KB65 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGU7_RAT UniProtKB/TrEMBL
  A0A8I6GKY4_RAT UniProtKB/TrEMBL
  A0A8J8XD81 ENTREZGENE, UniProtKB/TrEMBL
  A0A8J8XD85 ENTREZGENE, UniProtKB/TrEMBL
  B0BNC4 ENTREZGENE, UniProtKB/TrEMBL
  D3ZFL7 ENTREZGENE
  F1LMP4 ENTREZGENE
UniProt Secondary D3ZFL7 UniProtKB/TrEMBL
  F1LMP4 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Phykpl  5-phosphohydroxy-L-lysine phospho-lyase  LOC102547782  uncharacterized LOC102547782  Data Merged 737654 PROVISIONAL
2013-12-18 LOC102547782  uncharacterized LOC102547782      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-06-19 Phykpl  5-phosphohydroxy-L-lysine phospho-lyase  Agxt2l2  alanine-glyoxylate aminotransferase 2-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-06-13 Agxt2l2  alanine-glyoxylate aminotransferase 2-like 2      Symbol and Name status set to provisional 70820 PROVISIONAL