Neo1 (neogenin 1) - Rat Genome Database

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Gene: Neo1 (neogenin 1) Heterocephalus glaber
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Symbol: Neo1
Name: neogenin 1
RGD ID: 18936708
Description: ENCODES a protein that exhibits BMP receptor binding (ortholog); cadherin binding (ortholog); co-receptor binding (ortholog); INVOLVED IN intracellular iron ion homeostasis (ortholog); multicellular organismal-level iron ion homeostasis (ortholog); myoblast fusion (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bloom syndrome (ortholog); Brugada syndrome 8 (ortholog); FOUND IN cell surface (ortholog); glutamatergic synapse (ortholog); Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neogenin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247811,019,603 - 1,227,666 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247811,021,460 - 1,227,680 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Neo1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247811,019,603 - 1,227,666 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247811,021,460 - 1,227,680 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NEO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381573,051,692 - 73,305,206 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1573,051,710 - 73,305,205 (+)EnsemblGRCh38hg38GRCh38
GRCh371573,344,243 - 73,597,546 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361571,131,928 - 71,384,599 (+)NCBINCBI36Build 36hg18NCBI36
Build 341571,131,927 - 71,382,835NCBI
Celera1550,287,439 - 50,476,112 (+)NCBICelera
Cytogenetic Map15q24.1NCBI
HuRef1550,240,408 - 50,428,957 (+)NCBIHuRef
CHM1_11573,462,785 - 73,715,509 (+)NCBICHM1_1
T2T-CHM13v2.01570,868,937 - 71,122,333 (+)NCBIT2T-CHM13v2.0
Neo1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39958,781,962 - 58,943,926 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl958,781,970 - 58,943,724 (-)EnsemblGRCm39 Ensembl
GRCm38958,874,679 - 59,036,614 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl958,874,687 - 59,036,441 (-)EnsemblGRCm38mm10GRCm38
MGSCv37958,722,486 - 58,884,248 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36958,674,677 - 58,834,445 (-)NCBIMGSCv36mm8
Celera956,103,366 - 56,261,719 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map931.81NCBI
Neo1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8868,169,711 - 68,322,158 (-)NCBIGRCr8
mRatBN7.2859,273,860 - 59,426,486 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl859,275,569 - 59,430,348 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0863,649,871 - 63,756,394 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl863,653,266 - 63,750,531 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0863,417,857 - 63,524,875 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4862,681,481 - 62,789,841 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1862,702,413 - 62,806,918 (-)NCBI
Celera858,729,882 - 58,837,487 (-)NCBICelera
Cytogenetic Map8q24NCBI
Neo1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554504,191,168 - 4,375,896 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554504,191,168 - 4,324,997 (-)NCBIChiLan1.0ChiLan1.0
NEO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21662,281,800 - 62,534,799 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11566,446,196 - 66,699,224 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01551,968,238 - 52,221,116 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11570,680,970 - 70,979,687 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1570,789,035 - 70,977,178 (+)Ensemblpanpan1.1panPan2
NEO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13036,387,425 - 36,622,491 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3036,387,259 - 36,622,154 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3036,323,434 - 36,559,824 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03036,594,775 - 36,830,997 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3036,594,757 - 36,830,992 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13036,547,002 - 36,782,998 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03036,572,984 - 36,808,890 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03036,829,242 - 37,064,354 (+)NCBIUU_Cfam_GSD_1.0
Neo1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640114,443,410 - 114,671,197 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647132,292,745 - 32,516,624 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647132,345,578 - 32,517,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl760,064,994 - 60,300,562 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1760,064,984 - 60,299,892 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2764,688,218 - 64,785,685 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NEO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12610,173,707 - 10,427,732 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2610,176,215 - 10,427,675 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048131,173,745 - 131,432,558 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000022137   ⟹   ENSHGLP00000021927
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247811,019,603 - 1,227,666 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000022138   ⟹   ENSHGLP00000021928
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247811,019,603 - 1,227,666 (-)Ensembl
RefSeq Acc Id: XM_004855511   ⟹   XP_004855568
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247811,021,460 - 1,227,676 (-)NCBI
RefSeq Acc Id: XM_004855512   ⟹   XP_004855569
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247811,021,460 - 1,227,675 (-)NCBI
RefSeq Acc Id: XM_004855513   ⟹   XP_004855570
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247811,021,460 - 1,227,675 (-)NCBI
RefSeq Acc Id: XM_004855514   ⟹   XP_004855571
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247811,022,163 - 1,227,488 (-)NCBI
RefSeq Acc Id: XM_004855515   ⟹   XP_004855572
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247811,022,163 - 1,227,676 (-)NCBI
RefSeq Acc Id: XM_004855516   ⟹   XP_004855573
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247811,022,163 - 1,227,488 (-)NCBI
RefSeq Acc Id: XM_004855517   ⟹   XP_004855574
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247811,021,460 - 1,227,680 (-)NCBI
RefSeq Acc Id: XM_004855518   ⟹   XP_004855575
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247811,022,163 - 1,227,488 (-)NCBI
RefSeq Acc Id: XP_004855574   ⟸   XM_004855517
- Peptide Label: isoform X7
- UniProtKB: A0AAX6PNC1 (UniProtKB/TrEMBL),   G5BRE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855568   ⟸   XM_004855511
- Peptide Label: isoform X1
- UniProtKB: A0AAX6PN17 (UniProtKB/TrEMBL),   G5BRE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855570   ⟸   XM_004855513
- Peptide Label: isoform X3
- UniProtKB: A0AAX6PNL8 (UniProtKB/TrEMBL),   G5BRE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855569   ⟸   XM_004855512
- Peptide Label: isoform X2
- UniProtKB: A0AAX6PNH7 (UniProtKB/TrEMBL),   G5BRE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855572   ⟸   XM_004855515
- Peptide Label: isoform X5
- UniProtKB: A0AAX6PMJ3 (UniProtKB/TrEMBL),   G5BRE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855573   ⟸   XM_004855516
- Peptide Label: isoform X6
- UniProtKB: A0AAX6PNE3 (UniProtKB/TrEMBL),   G5BRE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855575   ⟸   XM_004855518
- Peptide Label: isoform X8
- UniProtKB: A0AAX6PPB0 (UniProtKB/TrEMBL),   G5BRE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855571   ⟸   XM_004855514
- Peptide Label: isoform X4
- UniProtKB: A0AAX6PP74 (UniProtKB/TrEMBL),   G5BRE9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000021928   ⟸   ENSHGLT00000022138
Ensembl Acc Id: ENSHGLP00000021927   ⟸   ENSHGLT00000022137


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015645 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000022137 ENTREZGENE
  ENSHGLT00000022138 ENTREZGENE
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Neogenin_C UniProtKB/TrEMBL
NCBI Gene Neo1 ENTREZGENE
PANTHER NEOGENIN UniProtKB/TrEMBL
  PROTEIN SIDEKICK UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_2 UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
  Neogenin_C UniProtKB/TrEMBL
PRINTS FNTYPEIII UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP Fibronectin type III UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/TrEMBL
UniProt A0AAX6PMJ3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PN17 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PNC1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PNE3 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PNH7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PNL8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PP74 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6PPB0 ENTREZGENE, UniProtKB/TrEMBL
  G5BRE9 ENTREZGENE, UniProtKB/TrEMBL