LOC101721592 (class I histocompatibility antigen, Gogo-B*0102 alpha chain-like) - Rat Genome Database

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Gene: LOC101721592 (class I histocompatibility antigen, Gogo-B*0102 alpha chain-like) Heterocephalus glaber
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Symbol: LOC101721592 (Ensembl: HLA-E)
Name: class I histocompatibility antigen, Gogo-B*0102 alpha chain-like
RGD ID: 18935823
Description: ENCODES a protein that exhibits peptide antigen binding (inferred); signaling receptor binding (inferred); INVOLVED IN adaptive immune response (inferred); antigen processing and presentation (inferred); antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent (inferred); FOUND IN endomembrane system (inferred); endosome (inferred); external side of plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HLA class I histocompatibility antigen, A-1 alpha chain
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,680,085 - 24,683,925 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,680,008 - 24,683,547 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000027618   ⟹   ENSHGLP00000027376
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475424,680,085 - 24,683,925 (+)Ensembl
RefSeq Acc Id: XM_004847028   ⟹   XP_004847085
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,680,008 - 24,683,547 (+)NCBI
RefSeq Acc Id: XM_013072856   ⟹   XP_012928310
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,680,008 - 24,683,547 (+)NCBI
RefSeq Acc Id: XM_013072857   ⟹   XP_012928311
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,680,008 - 24,683,547 (+)NCBI
RefSeq Acc Id: XM_021260125   ⟹   XP_021115784
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475424,680,008 - 24,681,501 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004847085 (Get FASTA)   NCBI Sequence Viewer  
  XP_012928310 (Get FASTA)   NCBI Sequence Viewer  
  XP_012928311 (Get FASTA)   NCBI Sequence Viewer  
  XP_021115784 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000027376
GenBank Protein JAN98586 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_012928310   ⟸   XM_013072856
- Peptide Label: isoform X1
- UniProtKB: A0AAX6P9U1 (UniProtKB/TrEMBL),   A0A0P6J4Z9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004847085   ⟸   XM_004847028
- Peptide Label: isoform X1
- UniProtKB: A0AAX6P9U1 (UniProtKB/TrEMBL),   A0A0P6J4Z9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012928311   ⟸   XM_013072857
- Peptide Label: isoform X1
- UniProtKB: A0AAX6P9U1 (UniProtKB/TrEMBL),   A0A0P6J4Z9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115784   ⟸   XM_021260125
- Peptide Label: isoform X2
- UniProtKB: A0AAX6T595 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000027376   ⟸   ENSHGLT00000027618


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000019467 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000027618 ENTREZGENE
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
  MHC class I-like antigen recognition-like UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  MHC_class-I_related UniProtKB/TrEMBL
  MHC_I-like_Ag-recog UniProtKB/TrEMBL
  MHC_I-like_Ag-recog_sf UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/TrEMBL
  MHC_I_a_a1/a2 UniProtKB/TrEMBL
  MHC_I_a_C UniProtKB/TrEMBL
NCBI Gene LOC101721592 ENTREZGENE
PANTHER IG-LIKE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  MHC CLASS I-RELATED UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  MHC_I UniProtKB/TrEMBL
  MHC_I_C UniProtKB/TrEMBL
PRINTS MHCCLASSI UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP Immunoglobulin UniProtKB/TrEMBL
  MHC antigen-recognition domain UniProtKB/TrEMBL
UniProt A0A0P6J4Z9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6P9U1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6T595 ENTREZGENE, UniProtKB/TrEMBL