Atp6v0b (ATPase H+ transporting V0 subunit b) - Rat Genome Database

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Gene: Atp6v0b (ATPase H+ transporting V0 subunit b) Heterocephalus glaber
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Symbol: Atp6v0b
Name: ATPase H+ transporting V0 subunit b
RGD ID: 18934245
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN monoatomic ion transport (inferred); proton transmembrane transport (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN clathrin-coated vesicle membrane (inferred); endosome (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase 21 kDa proteolipid subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248923,255,569 - 3,258,974 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248923,255,567 - 3,258,974 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Atp6v0b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248923,255,569 - 3,258,974 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248923,255,567 - 3,258,974 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP6V0B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38143,974,960 - 43,978,295 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl143,974,487 - 43,978,295 (+)EnsemblGRCh38hg38GRCh38
GRCh37144,440,632 - 44,443,967 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36144,213,189 - 44,216,559 (+)NCBINCBI36Build 36hg18NCBI36
Build 34144,109,703 - 44,113,059NCBI
Celera142,724,136 - 42,727,506 (+)NCBICelera
Cytogenetic Map1p34.1NCBI
HuRef142,556,155 - 42,559,525 (+)NCBIHuRef
CHM1_1144,556,855 - 44,560,225 (+)NCBICHM1_1
T2T-CHM13v2.0143,846,040 - 43,849,375 (+)NCBIT2T-CHM13v2.0
Atp6v0b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394117,741,523 - 117,744,548 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4117,741,523 - 117,744,530 (-)EnsemblGRCm39 Ensembl
GRCm384117,884,330 - 117,887,333 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4117,884,326 - 117,887,333 (-)EnsemblGRCm38mm10GRCm38
MGSCv374117,556,935 - 117,559,934 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364117,382,262 - 117,385,261 (-)NCBIMGSCv36mm8
Celera4116,599,496 - 116,602,496 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.73NCBI
Atp6v0b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85136,708,823 - 136,710,339 (-)NCBIGRCr8
mRatBN7.25131,423,384 - 131,424,900 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5131,423,387 - 131,426,401 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5134,128,448 - 134,129,964 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05135,883,065 - 135,884,581 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05135,905,489 - 135,907,005 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05136,718,352 - 136,719,868 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5136,718,352 - 136,721,379 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05140,507,401 - 140,508,917 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45138,349,548 - 138,351,064 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15138,354,772 - 138,358,109 (-)NCBI
Celera5129,971,582 - 129,973,098 (-)NCBICelera
Cytogenetic Map5q36NCBI
Atp6v0b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555373,501,011 - 3,504,408 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555373,501,011 - 3,504,408 (+)NCBIChiLan1.0ChiLan1.0
ATP6V0B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21182,831,377 - 182,834,862 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11181,972,709 - 181,976,170 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0143,276,696 - 43,280,099 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1144,647,577 - 44,651,482 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl144,647,822 - 44,651,482 (+)Ensemblpanpan1.1panPan2
ATP6V0B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11516,282,490 - 16,285,776 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1516,282,684 - 16,285,731 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1516,403,389 - 16,406,681 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01516,437,008 - 16,440,304 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1516,437,008 - 16,440,300 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11516,235,884 - 16,239,171 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01516,304,891 - 16,308,174 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01516,377,620 - 16,380,916 (-)NCBIUU_Cfam_GSD_1.0
Atp6v0b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505859,469,581 - 59,472,945 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647425,293,938 - 25,297,775 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647425,294,179 - 25,297,727 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V0B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6167,316,947 - 167,320,212 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16167,316,945 - 167,320,355 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ATP6V0B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12088,827,576 - 88,831,003 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2088,827,530 - 88,831,175 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603328,096,131 - 28,100,073 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000003464   ⟹   ENSHGLP00000003409
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248923,255,569 - 3,258,974 (+)Ensembl
RefSeq Acc Id: XM_004871898   ⟹   XP_004871955
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248923,255,567 - 3,258,974 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004871955 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000003409
  ENSHGLP00100014582
GenBank Protein JAO02093 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004871955   ⟸   XM_004871898
- UniProtKB: A0A0P6JGP3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000003409   ⟸   ENSHGLT00000003464


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000002522 Ensembl, ENTREZGENE
  ENSHGLG00100010789 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000003464 ENTREZGENE
  ENSHGLT00100014743 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.610 UniProtKB/TrEMBL
InterPro ATPase_proteolipid_c-like_dom UniProtKB/TrEMBL
  ATPase_proteolipid_csu UniProtKB/TrEMBL
  F/V-ATP_Csub_sf UniProtKB/TrEMBL
KEGG Report hgl:101718458 UniProtKB/TrEMBL
NCBI Gene Atp6v0b ENTREZGENE
PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT UniProtKB/TrEMBL
Pfam ATP-synt_C UniProtKB/TrEMBL
PRINTS VACATPASE UniProtKB/TrEMBL
Superfamily-SCOP SSF81333 UniProtKB/TrEMBL
UniProt A0A0P6JGP3 ENTREZGENE, UniProtKB/TrEMBL