Uckl1 (uridine-cytidine kinase 1 like 1) - Rat Genome Database

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Gene: Uckl1 (uridine-cytidine kinase 1 like 1) Heterocephalus glaber
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Symbol: Uckl1
Name: uridine-cytidine kinase 1 like 1
RGD ID: 18934051
Description: ENCODES a protein that exhibits ATP binding (inferred); kinase activity (inferred); nucleotide binding (inferred); INVOLVED IN CTP salvage (inferred); UMP salvage (inferred); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; mitochondrial neurogastrointestinal encephalopathy syndrome pathway; ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); benign familial infantile seizures 6 (ortholog); developmental and epileptic encephalopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Uridine-cytidine kinase-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474129,566,007 - 29,581,895 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474129,568,980 - 29,581,923 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
CTP salvage  (IEA)
UMP salvage  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Uckl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474129,566,007 - 29,581,895 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474129,568,980 - 29,581,923 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
UCKL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,939,829 - 63,956,416 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,939,829 - 63,956,416 (-)EnsemblGRCh38hg38GRCh38
GRCh372062,571,182 - 62,587,769 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362062,041,630 - 62,058,212 (-)NCBINCBI36Build 36hg18NCBI36
Build 342062,041,634 - 62,058,212NCBI
Celera2059,255,043 - 59,274,434 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2059,304,567 - 59,323,105 (-)NCBIHuRef
CHM1_12062,471,794 - 62,488,226 (-)NCBICHM1_1
T2T-CHM13v2.02065,759,678 - 65,777,377 (-)NCBIT2T-CHM13v2.0
Uckl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392181,210,942 - 181,223,820 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2181,210,942 - 181,226,685 (-)EnsemblGRCm39 Ensembl
GRCm382181,569,149 - 181,582,027 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2181,569,149 - 181,584,892 (-)EnsemblGRCm38mm10GRCm38
MGSCv372181,303,857 - 181,316,678 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362181,498,559 - 181,511,380 (-)NCBIMGSCv36mm8
Celera2185,650,746 - 185,663,572 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.66NCBI
Uckl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83189,052,365 - 189,064,939 (-)NCBIGRCr8
mRatBN7.23168,674,849 - 168,687,513 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3168,674,849 - 168,698,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3173,054,030 - 173,066,604 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03182,013,124 - 182,025,698 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03178,675,774 - 178,688,348 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03177,066,022 - 177,078,611 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3177,066,014 - 177,078,594 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03180,775,487 - 180,788,073 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43170,707,803 - 170,720,880 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3163,900,156 - 163,912,730 (+)NCBICelera
Cytogenetic Map3q43NCBI
Uckl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955528297,952 - 311,306 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955528297,952 - 311,306 (+)NCBIChiLan1.0ChiLan1.0
UCKL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22169,751,874 - 69,776,594 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12069,743,884 - 69,768,578 (-)NCBINHGRI_mPanPan1
PanPan1.12061,860,084 - 61,876,202 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2061,860,084 - 61,876,194 (-)Ensemblpanpan1.1panPan2
UCKL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12447,412,520 - 47,423,222 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2447,412,521 - 47,432,860 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2446,545,991 - 46,557,047 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02448,551,585 - 48,562,625 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2448,551,592 - 48,562,625 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12447,395,875 - 47,406,868 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02447,520,665 - 47,531,762 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02448,259,048 - 48,269,306 (-)NCBIUU_Cfam_GSD_1.0
Uckl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640195,690,998 - 195,702,853 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651411,144,026 - 11,156,455 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651411,144,641 - 11,156,470 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UCKL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,785,422 - 62,796,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,785,419 - 62,796,396 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UCKL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12282,267 - 299,148 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2282,365 - 299,099 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605047,812,703 - 47,832,460 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000018639   ⟹   ENSHGLP00000018455
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474129,566,007 - 29,581,895 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000018640   ⟹   ENSHGLP00000018456
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474129,566,007 - 29,580,318 (-)Ensembl
RefSeq Acc Id: XM_004841112   ⟹   XP_004841169
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474129,568,980 - 29,581,826 (-)NCBI
RefSeq Acc Id: XM_013070842   ⟹   XP_012926296
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474129,570,411 - 29,581,923 (-)NCBI
RefSeq Acc Id: XM_021255293   ⟹   XP_021110952
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474129,568,980 - 29,581,923 (-)NCBI
RefSeq Acc Id: XM_021255294   ⟹   XP_021110953
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474129,568,980 - 29,581,923 (-)NCBI
RefSeq Acc Id: XM_021255296   ⟹   XP_021110955
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474129,568,980 - 29,581,923 (-)NCBI
RefSeq Acc Id: XM_021255297   ⟹   XP_021110956
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474129,568,980 - 29,581,923 (-)NCBI
RefSeq Acc Id: XM_021255298   ⟹   XP_021110957
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474129,568,980 - 29,580,251 (-)NCBI
RefSeq Acc Id: XM_021255299   ⟹   XP_021110958
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474129,568,980 - 29,580,251 (-)NCBI
RefSeq Acc Id: XM_021255300   ⟹   XP_021110959
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474129,568,980 - 29,580,443 (-)NCBI
RefSeq Acc Id: XM_021255301   ⟹   XP_021110960
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474129,568,980 - 29,580,251 (-)NCBI
RefSeq Acc Id: XM_021255302   ⟹   XP_021110961
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474129,568,980 - 29,580,251 (-)NCBI
RefSeq Acc Id: XP_021110956   ⟸   XM_021255297
- Peptide Label: isoform X5
- UniProtKB: A0AAX6SN16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110955   ⟸   XM_021255296
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SP44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110952   ⟸   XM_021255293
- Peptide Label: isoform X1
- UniProtKB: A0AAX6SMV0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110953   ⟸   XM_021255294
- Peptide Label: isoform X2
- UniProtKB: A0AAX6ST58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004841169   ⟸   XM_004841112
- Peptide Label: isoform X4
- UniProtKB: A0AAX6P0X4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110959   ⟸   XM_021255300
- Peptide Label: isoform X6
- UniProtKB: A0AAX6SPP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110958   ⟸   XM_021255299
- Peptide Label: isoform X6
- UniProtKB: A0AAX6SPP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110961   ⟸   XM_021255302
- Peptide Label: isoform X8
- UniProtKB: A0AAX6SR42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110957   ⟸   XM_021255298
- Peptide Label: isoform X6
- UniProtKB: A0AAX6SPP5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021110960   ⟸   XM_021255301
- Peptide Label: isoform X7
- UniProtKB: G5C8B3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012926296   ⟸   XM_013070842
- Peptide Label: isoform X9
- UniProtKB: A0AAX6QU45 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000018455   ⟸   ENSHGLT00000018639
Ensembl Acc Id: ENSHGLP00000018456   ⟸   ENSHGLT00000018640


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013221 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000018639 ENTREZGENE
Gene3D-CATH 3.40.50.2020 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  PRibTrfase_dom UniProtKB/TrEMBL
  PRK/URK UniProtKB/TrEMBL
  PRTase-like UniProtKB/TrEMBL
  Uridine_kinase-like UniProtKB/TrEMBL
NCBI Gene Uckl1 ENTREZGENE
PANTHER URIDINE KINASE UniProtKB/TrEMBL
Pfam PRK UniProtKB/TrEMBL
  UPRTase UniProtKB/TrEMBL
PRINTS URIDINKINASE UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
  SSF53271 UniProtKB/TrEMBL
UniProt A0AAX6P0X4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QU45 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SMV0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SN16 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SP44 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SPP5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SR42 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6ST58 ENTREZGENE, UniProtKB/TrEMBL
  G5C8B3 ENTREZGENE, UniProtKB/TrEMBL