Atp6v1c2 (ATPase H+ transporting V1 subunit C2) - Rat Genome Database

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Gene: Atp6v1c2 (ATPase H+ transporting V1 subunit C2) Heterocephalus glaber
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Symbol: Atp6v1c2
Name: ATPase H+ transporting V1 subunit C2
RGD ID: 18933850
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of Wnt signaling pathway (ortholog); ASSOCIATED WITH Distal Renal Tubular Acidosis (ortholog); megacolon (ortholog); renal tubular acidosis (ortholog); FOUND IN lysosomal membrane (inferred); proton-transporting V-type ATPase, V1 domain (inferred); vacuolar proton-transporting V-type ATPase, V1 domain (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit C 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248654,711,119 - 4,734,740 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248654,711,324 - 4,734,409 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp6v1c2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248654,711,119 - 4,734,740 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248654,711,324 - 4,734,409 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP6V1C2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38210,720,943 - 10,785,110 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl210,721,100 - 10,785,110 (+)EnsemblGRCh38hg38GRCh38
GRCh37210,861,756 - 10,925,236 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36210,779,226 - 10,842,687 (+)NCBINCBI36Build 36hg18NCBI36
Build 34210,812,420 - 10,875,832NCBI
Celera210,777,001 - 10,840,382 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef210,713,330 - 10,776,550 (+)NCBIHuRef
CHM1_1210,791,519 - 10,854,975 (+)NCBICHM1_1
T2T-CHM13v2.0210,750,978 - 10,815,109 (+)NCBIT2T-CHM13v2.0
Atp6v1c2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391217,334,722 - 17,375,700 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1217,334,722 - 17,379,360 (-)EnsemblGRCm39 Ensembl
GRCm381217,284,721 - 17,325,386 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1217,284,721 - 17,329,359 (-)EnsemblGRCm38mm10GRCm38
MGSCv371217,291,527 - 17,331,536 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361217,310,201 - 17,350,192 (-)NCBIMGSCv36mm8
Celera1217,606,632 - 17,646,929 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map128.06NCBI
Atp6v1c2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8645,809,269 - 45,872,914 (-)NCBIGRCr8
mRatBN7.2640,080,545 - 40,144,199 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl640,080,547 - 40,120,028 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx640,407,983 - 40,447,436 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0640,722,678 - 40,762,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0640,155,927 - 40,195,380 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0642,585,452 - 42,632,289 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl642,585,934 - 42,630,983 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0652,307,211 - 52,351,972 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera639,381,677 - 39,420,442 (-)NCBICelera
Cytogenetic Map6q16NCBI
Atp6v1c2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554875,711,235 - 5,735,081 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554875,711,235 - 5,735,081 (+)NCBIChiLan1.0ChiLan1.0
ATP6V1C2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212115,734,027 - 115,825,994 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A115,737,998 - 115,829,120 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A10,689,538 - 10,783,372 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A10,874,395 - 10,936,457 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A10,872,071 - 10,936,457 (+)Ensemblpanpan1.1panPan2
ATP6V1C2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1177,602,348 - 7,653,402 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl177,599,535 - 7,653,402 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha177,526,180 - 7,578,668 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0177,702,415 - 7,755,089 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl177,702,390 - 7,755,089 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1177,589,007 - 7,641,343 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0177,591,391 - 7,643,850 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0177,604,848 - 7,657,564 (+)NCBIUU_Cfam_GSD_1.0
Atp6v1c2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629252,063,348 - 52,116,116 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365326,818,758 - 6,865,959 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365326,818,387 - 6,866,691 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1C2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3125,775,099 - 125,825,244 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13125,774,259 - 125,825,752 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23134,530,646 - 134,581,910 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1C2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11496,827,671 - 96,894,854 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1496,828,451 - 96,893,116 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604515,398,860 - 15,464,184 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000001417   ⟹   ENSHGLP00000001374
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248654,711,119 - 4,734,740 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000001418   ⟹   ENSHGLP00000001375
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248654,711,484 - 4,733,007 (-)Ensembl
RefSeq Acc Id: XM_004869950   ⟹   XP_004870007
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248654,711,324 - 4,734,402 (-)NCBI
RefSeq Acc Id: XM_004869951   ⟹   XP_004870008
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248654,711,324 - 4,734,409 (-)NCBI
RefSeq Acc Id: XM_004869952   ⟹   XP_004870009
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248654,711,324 - 4,734,169 (-)NCBI
RefSeq Acc Id: XM_021248370   ⟹   XP_021104029
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248654,711,324 - 4,734,409 (-)NCBI
RefSeq Acc Id: XM_021248371   ⟹   XP_021104030
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248654,711,324 - 4,733,007 (-)NCBI
RefSeq Acc Id: XM_021248372   ⟹   XP_021104031
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248654,711,580 - 4,734,409 (-)NCBI
RefSeq Acc Id: XM_021248373   ⟹   XP_021104032
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248654,711,324 - 4,734,409 (-)NCBI
RefSeq Acc Id: XM_021248374   ⟹   XP_021104033
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248654,711,484 - 4,733,007 (-)NCBI
RefSeq Acc Id: XM_021248375   ⟹   XP_021104034
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248654,714,172 - 4,734,409 (-)NCBI
RefSeq Acc Id: XM_021248376   ⟹   XP_021104035
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248654,711,324 - 4,734,408 (-)NCBI
RefSeq Acc Id: XM_021248377   ⟹   XP_021104036
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248654,715,298 - 4,734,409 (-)NCBI
RefSeq Acc Id: XP_021104032   ⟸   XM_021248373
- Peptide Label: isoform X5
- UniProtKB: A0AAX6S7S8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104029   ⟸   XM_021248370
- Peptide Label: isoform X2
- UniProtKB: A0AAX6S5B2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004870008   ⟸   XM_004869951
- Peptide Label: isoform X1
- UniProtKB: A0AAX6Q8D0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104035   ⟸   XM_021248376
- Peptide Label: isoform X8
- UniProtKB: A0AAX6S8L8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004870007   ⟸   XM_004869950
- Peptide Label: isoform X1
- UniProtKB: A0AAX6Q8D0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004870009   ⟸   XM_004869952
- Peptide Label: isoform X1
- UniProtKB: A0AAX6Q8D0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104030   ⟸   XM_021248371
- Peptide Label: isoform X3
- UniProtKB: G5B590 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104033   ⟸   XM_021248374
- Peptide Label: isoform X6
- UniProtKB: A0AAX6S6E7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104031   ⟸   XM_021248372
- Peptide Label: isoform X4
- UniProtKB: A0AAX6S5R2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104034   ⟸   XM_021248375
- Peptide Label: isoform X7
- UniProtKB: A0AAX6S5T2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104036   ⟸   XM_021248377
- Peptide Label: isoform X9
- UniProtKB: A0AAX6S3H0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000001374   ⟸   ENSHGLT00000001417
Ensembl Acc Id: ENSHGLP00000001375   ⟸   ENSHGLT00000001418


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001064 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000001417 ENTREZGENE
Gene3D-CATH 3.30.70.100 UniProtKB/TrEMBL
  subunit c (vma5p) of the yeast v-atpase, domain 2 UniProtKB/TrEMBL
InterPro ATPase_V1-cplx_csu UniProtKB/TrEMBL
  Vac_ATP_synth_c_sf UniProtKB/TrEMBL
NCBI Gene Atp6v1c2 ENTREZGENE
PANTHER PTHR10137 UniProtKB/TrEMBL
  V-TYPE PROTON ATPASE SUBUNIT C 2 UniProtKB/TrEMBL
Pfam V-ATPase_C UniProtKB/TrEMBL
Superfamily-SCOP SSF118203 UniProtKB/TrEMBL
UniProt A0AAX6Q8D0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S3H0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S5B2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S5R2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S5T2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S6E7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S7S8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S8L8 ENTREZGENE, UniProtKB/TrEMBL
  G5B590 ENTREZGENE, UniProtKB/TrEMBL