Cbx1 (chromobox 1) - Rat Genome Database

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Gene: Cbx1 (chromobox 1) Heterocephalus glaber
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Symbol: Cbx1
Name: chromobox 1
RGD ID: 18931291
Description: ENCODES a protein that exhibits enzyme binding (inferred); histone methyltransferase binding (inferred); identical protein binding (inferred); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); prostate cancer (ortholog); Prostatic Neoplasms (ortholog); FOUND IN chromatin (inferred); chromocenter (inferred); chromosome, centromeric region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromobox protein homolog 1; Chromobox protein-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247954,667,765 - 4,689,898 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247954,667,765 - 4,689,881 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cbx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247954,667,765 - 4,689,898 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247954,667,765 - 4,689,881 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CBX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381748,070,059 - 48,101,478 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1748,070,052 - 48,101,478 (-)EnsemblGRCh38hg38GRCh38
GRCh371746,147,421 - 46,178,840 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361743,502,420 - 43,533,360 (-)NCBINCBI36Build 36hg18NCBI36
Build 341743,502,421 - 43,533,360NCBI
Celera1742,600,238 - 42,633,237 (-)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1741,515,771 - 41,548,743 (-)NCBIHuRef
CHM1_11746,212,408 - 46,243,879 (-)NCBICHM1_1
T2T-CHM13v2.01748,931,877 - 48,964,812 (-)NCBIT2T-CHM13v2.0
Cbx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,679,506 - 96,699,808 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1196,679,953 - 96,699,466 (+)EnsemblGRCm39 Ensembl
GRCm381196,788,680 - 96,808,982 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,789,127 - 96,808,640 (+)EnsemblGRCm38mm10GRCm38
MGSCv371196,650,450 - 96,669,954 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361196,605,249 - 96,624,730 (+)NCBIMGSCv36mm8
Celera11106,447,917 - 106,455,791 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1160.11NCBI
Cbx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81082,266,746 - 82,286,431 (+)NCBIGRCr8
mRatBN7.21081,770,307 - 81,789,981 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1081,770,342 - 81,791,096 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1086,718,002 - 86,737,691 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01086,216,048 - 86,235,741 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01081,608,645 - 81,628,335 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01084,656,698 - 84,677,112 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1084,669,914 - 84,675,741 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01084,449,614 - 84,470,027 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41085,544,537 - 85,564,903 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11085,539,437 - 85,578,851 (+)NCBI
Celera1080,531,367 - 80,552,403 (+)NCBICelera
Cytogenetic Map10q31NCBI
Cbx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,066,628 - 13,083,693 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,066,628 - 13,083,693 (+)NCBIChiLan1.0ChiLan1.0
CBX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21916,999,946 - 17,033,748 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11718,965,548 - 18,999,327 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0179,434,141 - 9,467,865 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1179,616,923 - 9,647,883 (+)NCBIpanpan1.1PanPan1.1panPan2
CBX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1924,363,566 - 24,369,060 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl924,358,885 - 24,369,060 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha923,829,363 - 23,850,430 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0925,157,318 - 25,178,406 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl925,158,689 - 25,177,393 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1923,926,775 - 23,947,857 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0924,187,435 - 24,208,348 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0924,314,854 - 24,335,770 (-)NCBIUU_Cfam_GSD_1.0
Cbx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560223,813,951 - 23,832,175 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649013,242,949 - 13,261,195 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649013,242,949 - 13,261,195 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CBX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1224,315,518 - 24,351,052 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11224,319,104 - 24,351,057 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,219,822 - 24,248,118 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CBX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11668,471,298 - 68,508,180 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607739,523,509 - 39,556,340 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000019117   ⟹   ENSHGLP00000018928
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247954,667,765 - 4,689,898 (-)Ensembl
RefSeq Acc Id: XM_004859596   ⟹   XP_004859653
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247954,667,765 - 4,689,881 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004859653 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB14177 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018928
GenBank Protein JAN96373 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004859653   ⟸   XM_004859596
- UniProtKB: G5BY16 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000018928   ⟸   ENSHGLT00000019117


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013574 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019117 ENTREZGENE
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chromo-like_dom_sf UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/TrEMBL
  Chromo_dom_subgr UniProtKB/TrEMBL
  Chromo_domain UniProtKB/TrEMBL
  Chromo_shadow_dom UniProtKB/TrEMBL
  Chromodomain_CS UniProtKB/TrEMBL
  Heterochromatin_chromo-domain UniProtKB/TrEMBL
KEGG Report hgl:101706928 UniProtKB/TrEMBL
NCBI Gene Cbx1 ENTREZGENE
PANTHER CHROMOBOX PROTEIN UniProtKB/TrEMBL
  CHROMOBOX PROTEIN HOMOLOG 1 UniProtKB/TrEMBL
Pfam Chromo UniProtKB/TrEMBL
  Chromo_shadow UniProtKB/TrEMBL
PRINTS CHROMODOMAIN UniProtKB/TrEMBL
PROSITE CHROMO_1 UniProtKB/TrEMBL
  CHROMO_2 UniProtKB/TrEMBL
SMART CHROMO UniProtKB/TrEMBL
  ChSh UniProtKB/TrEMBL
Superfamily-SCOP SSF54160 UniProtKB/TrEMBL
UniProt G5BY16 ENTREZGENE, UniProtKB/TrEMBL