Nup62 (nucleoporin 62) - Rat Genome Database

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Gene: Nup62 (nucleoporin 62) Heterocephalus glaber
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Symbol: Nup62
Name: nucleoporin 62
RGD ID: 18930537
Description: ENCODES a protein that exhibits Hsp70 protein binding (ortholog); Hsp90 protein binding (ortholog); kinesin binding (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); cellular senescence (ortholog); centriole assembly (ortholog); PARTICIPATES IN mRNA nuclear export pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 12 (ortholog); primary biliary cholangitis (ortholog); Striatonigral Degeneration, Infantile (ortholog); FOUND IN annulate lamellae (ortholog); centrosome (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Nuclear pore glycoprotein p62
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,404,245 - 4,428,231 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,404,367 - 4,428,231 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Nup62
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,404,245 - 4,428,231 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,404,367 - 4,428,231 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NUP62
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,906,825 - 49,929,504 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,906,825 - 49,929,764 (-)EnsemblGRCh38hg38GRCh38
GRCh371950,410,082 - 50,432,761 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361955,101,894 - 55,124,598 (-)NCBINCBI36Build 36hg18NCBI36
Build 341955,101,893 - 55,124,598NCBI
Celera1947,279,595 - 47,302,503 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,786,417 - 46,809,243 (-)NCBIHuRef
CHM1_11950,411,926 - 50,434,816 (-)NCBICHM1_1
T2T-CHM13v2.01952,906,960 - 52,929,639 (-)NCBIT2T-CHM13v2.0
Nup62
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,465,512 - 44,481,260 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,465,512 - 44,480,236 (+)EnsemblGRCm39 Ensembl
GRCm38744,816,088 - 44,831,836 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,816,088 - 44,830,812 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,071,790 - 52,086,177 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,684,462 - 44,698,849 (+)NCBIMGSCv36mm8
Celera740,266,716 - 40,281,098 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map728.93NCBI
Nup62
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,435,532 - 104,451,392 (+)NCBIGRCr8
mRatBN7.2195,298,995 - 95,314,902 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,295,526 - 95,315,174 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,684,924 - 100,700,286 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,157,589 - 109,172,951 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,447,996 - 102,463,359 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01100,811,140 - 100,827,119 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,811,755 - 100,827,111 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01101,876,161 - 101,891,789 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,288,019 - 95,303,545 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,378,221 - 95,382,015 (+)NCBI
Celera189,561,555 - 89,576,634 (+)NCBICelera
Cytogenetic Map1q22NCBI
Nup62
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,030,894 - 1,032,462 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,012,919 - 1,033,465 (+)NCBIChiLan1.0ChiLan1.0
NUP62
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22056,022,278 - 56,044,867 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,943,134 - 57,965,715 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,919,731 - 46,942,318 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,835,593 - 55,858,165 (-)NCBIpanpan1.1PanPan1.1panPan2
NUP62
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,636,282 - 106,661,250 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,219,723 - 106,244,693 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,157,688 - 107,182,656 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,157,675 - 107,182,663 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11106,829,847 - 106,854,818 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,472,003 - 106,496,982 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,312,293 - 107,337,261 (+)NCBIUU_Cfam_GSD_1.0
Nup62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934922,072,538 - 22,095,600 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,690,567 - 3,713,719 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,690,728 - 3,713,819 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP62
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,921,627 - 54,923,227 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,921,627 - 54,945,705 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,696,590 - 50,727,405 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUP62
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1643,063,483 - 43,086,264 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl643,064,875 - 43,066,440 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607323,038,779 - 23,061,398 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000010645   ⟹   ENSHGLP00000010528
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248324,404,245 - 4,428,231 (+)Ensembl
RefSeq Acc Id: XM_004866850   ⟹   XP_004866907
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248324,404,803 - 4,428,231 (+)NCBI
RefSeq Acc Id: XM_004866851   ⟹   XP_004866908
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248324,404,367 - 4,428,231 (+)NCBI
RefSeq Acc Id: XM_004866852   ⟹   XP_004866909
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248324,404,455 - 4,428,231 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004866907 (Get FASTA)   NCBI Sequence Viewer  
  XP_004866908 (Get FASTA)   NCBI Sequence Viewer  
  XP_004866909 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB05676 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000010528
GenBank Protein JAO03097 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004866908   ⟸   XM_004866851
- UniProtKB: A0A0P6JF42 (UniProtKB/TrEMBL),   G5B8R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004866909   ⟸   XM_004866852
- UniProtKB: A0A0P6JF42 (UniProtKB/TrEMBL),   G5B8R5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004866907   ⟸   XM_004866850
- UniProtKB: A0A0P6JF42 (UniProtKB/TrEMBL),   G5B8R5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000010528   ⟸   ENSHGLT00000010645


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000007553 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000010645 ENTREZGENE
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
InterPro NSP1/NUP62 UniProtKB/TrEMBL
  Nucleoporin_NSP1_C UniProtKB/TrEMBL
KEGG Report hgl:101708524 UniProtKB/TrEMBL
NCBI Gene Nup62 ENTREZGENE
PANTHER NUCLEAR PORE GLYCOPROTEIN P62 UniProtKB/TrEMBL
  PTHR12084 UniProtKB/TrEMBL
Pfam Nsp1_C UniProtKB/TrEMBL
UniProt A0A0P6JF42 ENTREZGENE, UniProtKB/TrEMBL
  G5B8R5 ENTREZGENE, UniProtKB/TrEMBL