S100a9 (S100 calcium binding protein A9) - Rat Genome Database

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Gene: S100a9 (S100 calcium binding protein A9) Heterocephalus glaber
Analyze
Symbol: S100a9
Name: S100 calcium binding protein A9
RGD ID: 18929834
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent protein binding (inferred); metal ion binding (inferred); INVOLVED IN actin cytoskeleton organization (ortholog); astrocyte development (ortholog); autophagy (ortholog); ASSOCIATED WITH Acute Otitis Media (ortholog); adult respiratory distress syndrome (ortholog); celiac disease (ortholog); FOUND IN calprotectin complex (ortholog); cornified envelope (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Protein S100-A9
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624885762,934 - 770,129 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624885767,455 - 770,023 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
S100a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624885762,934 - 770,129 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624885767,455 - 770,023 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
S100A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,357,854 - 153,361,023 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,357,854 - 153,361,023 (+)EnsemblGRCh38hg38GRCh38
GRCh371153,330,330 - 153,333,499 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,596,954 - 151,600,127 (+)NCBINCBI36Build 36hg18NCBI36
Build 341150,143,402 - 150,146,572NCBI
Celera1126,401,585 - 126,404,758 (+)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,693,742 - 124,696,915 (+)NCBIHuRef
CHM1_11154,726,043 - 154,729,216 (+)NCBICHM1_1
T2T-CHM13v2.01152,495,082 - 152,498,250 (+)NCBIT2T-CHM13v2.0
S100a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,599,937 - 90,603,028 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,599,939 - 90,603,028 (-)EnsemblGRCm39 Ensembl
GRCm38390,692,630 - 90,695,721 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,692,632 - 90,695,721 (-)EnsemblGRCm38mm10GRCm38
MGSCv37390,496,555 - 90,499,613 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,778,560 - 90,781,618 (-)NCBIMGSCv36mm8
Celera390,734,035 - 90,737,073 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.91NCBI
S100a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,487,941 - 178,490,622 (-)NCBIGRCr8
mRatBN7.22176,190,361 - 176,193,182 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2176,190,361 - 176,193,230 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,330,642 - 183,333,356 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,352,896 - 181,355,616 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,952,748 - 175,955,457 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02190,097,436 - 190,100,209 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2190,097,554 - 190,100,276 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,531,410 - 209,534,182 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,985,466 - 182,988,147 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,935,571 - 182,938,253 (-)NCBI
Celera2170,123,110 - 170,125,791 (-)NCBICelera
Cytogenetic Map2q34NCBI
S100a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495559290,647 - 93,842 (-)NCBIChiLan1.0ChiLan1.0
S100A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,476,678 - 96,479,961 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,212,332 - 96,215,614 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,709,175 - 128,712,461 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,338,246 - 132,341,497 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,338,246 - 132,341,497 (+)Ensemblpanpan1.1panPan2
S100A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,566,993 - 43,570,074 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha743,059,875 - 43,062,952 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,516,666 - 43,519,742 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,516,663 - 43,519,740 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,218,969 - 43,222,044 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,272,875 - 43,275,945 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,556,431 - 43,559,507 (-)NCBIUU_Cfam_GSD_1.0
S100a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,197,707 - 24,200,267 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,228,092 - 3,230,676 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,228,097 - 3,230,652 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1496,236,114 - 96,238,989 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24105,063,477 - 105,066,298 (+)NCBISscrofa10.2Sscrofa10.2susScr3
S100A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,391,965 - 10,395,216 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,391,934 - 10,394,720 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,860,727 - 9,863,974 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000014751   ⟹   ENSHGLP00000014606
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624885762,934 - 770,129 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000014752   ⟹   ENSHGLP00000014607
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624885767,374 - 770,129 (+)Ensembl
RefSeq Acc Id: XM_004871129   ⟹   XP_004871186
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624885767,455 - 770,023 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004871186 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA97923 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014607
GenBank Protein JAO01981 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004871186   ⟸   XM_004871129
- UniProtKB: G5ALL3 (UniProtKB/TrEMBL),   A0AAX6QA00 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000014607   ⟸   ENSHGLT00000014752
Ensembl Acc Id: ENSHGLP00000014606   ⟸   ENSHGLT00000014751


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010448 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000014752 ENTREZGENE
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
NCBI Gene S100a9 ENTREZGENE
PANTHER PROTEIN S100-A9 UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam S_100 UniProtKB/TrEMBL
PROSITE EF_HAND_2 UniProtKB/TrEMBL
SMART S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0AAX6QA00 ENTREZGENE, UniProtKB/TrEMBL
  G5ALL3 ENTREZGENE, UniProtKB/TrEMBL