Slc36a2 (solute carrier family 36 member 2) - Rat Genome Database

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Gene: Slc36a2 (solute carrier family 36 member 2) Heterocephalus glaber
Analyze
Symbol: Slc36a2
Name: solute carrier family 36 member 2
RGD ID: 18929813
Description: ENCODES a protein that exhibits glycine transmembrane transporter activity (ortholog); L-tyrosine transmembrane transporter activity (ortholog); INVOLVED IN amino acid export across plasma membrane (ortholog); positive regulation of glycine import across plasma membrane (ortholog); proline transmembrane transport (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Glycinuria with or without Oxalate Urolithiasis (ortholog); GM2 gangliosidosis, AB variant (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proton-coupled amino acid transporter 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473341,201,100 - 41,228,600 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473341,201,065 - 41,229,876 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc36a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473341,201,100 - 41,228,600 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473341,201,065 - 41,229,876 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC36A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385151,314,972 - 151,347,559 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5151,314,972 - 151,347,590 (-)EnsemblGRCh38hg38GRCh38
GRCh375150,694,533 - 150,727,120 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365150,674,732 - 150,707,312 (-)NCBINCBI36Build 36hg18NCBI36
Build 345150,674,732 - 150,707,312NCBI
Celera5146,775,913 - 146,808,530 (-)NCBICelera
Cytogenetic Map5q33.1NCBI
HuRef5145,839,925 - 145,872,555 (-)NCBIHuRef
CHM1_15150,127,312 - 150,159,946 (-)NCBICHM1_1
T2T-CHM13v2.05151,853,922 - 151,886,528 (-)NCBIT2T-CHM13v2.0
Slc36a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391155,049,294 - 55,075,924 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1155,049,296 - 55,075,903 (-)EnsemblGRCm39 Ensembl
GRCm381155,158,468 - 55,185,099 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1155,158,470 - 55,185,077 (-)EnsemblGRCm38mm10GRCm38
MGSCv371154,971,970 - 54,998,579 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361155,001,915 - 55,028,500 (-)NCBIMGSCv36mm8
Celera1159,748,113 - 59,775,172 (-)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.16NCBI
Slc36a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81039,778,667 - 39,806,781 (-)NCBIGRCr8
mRatBN7.21039,278,002 - 39,306,082 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1039,278,046 - 39,306,082 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1043,964,963 - 43,992,957 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01043,455,046 - 43,483,042 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01038,958,748 - 38,986,750 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01040,497,184 - 40,525,033 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1040,496,622 - 40,525,008 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01040,335,810 - 40,363,646 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41040,562,983 - 40,590,958 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11040,576,605 - 40,604,581 (-)NCBI
Celera1038,615,534 - 38,643,484 (-)NCBICelera
Cytogenetic Map10q22NCBI
Slc36a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554082,363,418 - 2,393,904 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554082,363,416 - 2,392,210 (+)NCBIChiLan1.0ChiLan1.0
SLC36A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24146,543,920 - 146,579,487 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15144,683,465 - 144,719,032 (-)NCBINHGRI_mPanPan1
PanPan1.1 Ensembl5152,744,831 - 152,775,431 (-)Ensemblpanpan1.1panPan2
SLC36A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1457,933,506 - 57,959,359 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl457,933,453 - 57,992,587 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha457,753,300 - 57,777,996 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0458,375,008 - 58,399,684 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl458,374,921 - 58,431,913 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1458,192,675 - 58,217,353 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0458,291,078 - 58,315,788 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0458,794,930 - 58,819,608 (+)NCBIUU_Cfam_GSD_1.0
Slc36a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213112,845,964 - 112,881,043 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651511,295,451 - 11,327,702 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651511,295,315 - 11,330,463 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC36A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1671,618,797 - 71,689,218 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11671,661,946 - 71,689,464 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21677,826,126 - 77,921,625 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC36A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12353,870,540 - 53,903,773 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2353,870,539 - 53,903,523 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603423,809,264 - 23,842,474 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000022509   ⟹   ENSHGLP00000022298
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473341,201,100 - 41,228,600 (-)Ensembl
RefSeq Acc Id: XM_004836672   ⟹   XP_004836729
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473341,201,065 - 41,228,569 (-)NCBI
RefSeq Acc Id: XM_021241942   ⟹   XP_021097601
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473341,201,065 - 41,229,876 (-)NCBI
RefSeq Acc Id: XM_021241945   ⟹   XP_021097604
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473341,201,065 - 41,229,875 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004836729 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097601 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097604 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022298
RefSeq Acc Id: XP_021097601   ⟸   XM_021241942
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RJX1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021097604   ⟸   XM_021241945
- Peptide Label: isoform X3
- UniProtKB: A0AAX6RNP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004836729   ⟸   XM_004836672
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J278 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000022298   ⟸   ENSHGLT00000022509


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015897 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000022509 ENTREZGENE, UniProtKB/TrEMBL
InterPro AA_transpt_TM UniProtKB/TrEMBL
KEGG Report hgl:101706906 UniProtKB/TrEMBL
NCBI Gene Slc36a2 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/TrEMBL
  PROTON-COUPLED AMINO ACID TRANSPORTER 2 UniProtKB/TrEMBL
Pfam Aa_trans UniProtKB/TrEMBL
UniProt A0A0P6J278 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RJX1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RNP8 ENTREZGENE, UniProtKB/TrEMBL