Scmh1 (Scm polycomb group protein homolog 1) - Rat Genome Database

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Gene: Scmh1 (Scm polycomb group protein homolog 1) Heterocephalus glaber
Analyze
Symbol: Scmh1
Name: Scm polycomb group protein homolog 1
RGD ID: 18929201
Description: ENCODES a protein that exhibits chromatin binding (inferred); histone binding (inferred); INVOLVED IN anterior/posterior pattern specification (ortholog); chromatin remodeling (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); immunodeficiency 24 (ortholog); FOUND IN chromocenter (ortholog); male germ cell nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Polycomb protein SCMH1; sex comb on midleg homolog 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624892435,459 - 550,941 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624892435,145 - 621,203 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074  


Genomics

Comparative Map Data
Scmh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624892435,459 - 550,941 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624892435,145 - 621,203 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SCMH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38141,027,202 - 41,242,306 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl141,027,202 - 41,242,306 (-)EnsemblGRCh38hg38GRCh38
GRCh37141,492,874 - 41,707,978 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36141,265,461 - 41,480,375 (-)NCBINCBI36Build 36hg18NCBI36
Build 34141,161,969 - 41,376,881NCBI
Celera139,775,792 - 39,990,782 (-)NCBICelera
Cytogenetic Map1p34.2NCBI
HuRef139,609,958 - 39,825,006 (-)NCBIHuRef
CHM1_1141,608,779 - 41,823,761 (-)NCBICHM1_1
T2T-CHM13v2.0140,896,567 - 41,111,749 (-)NCBIT2T-CHM13v2.0
Scmh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394120,262,347 - 120,387,397 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4120,262,478 - 120,387,383 (+)EnsemblGRCm39 Ensembl
GRCm384120,405,150 - 120,530,200 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4120,405,281 - 120,530,186 (+)EnsemblGRCm38mm10GRCm38
MGSCv374120,077,886 - 120,202,804 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364119,903,044 - 120,027,590 (+)NCBIMGSCv36mm8
Celera4119,122,290 - 119,247,186 (+)NCBICelera
Cytogenetic Map4D2.1NCBI
cM Map456.52NCBI
Scmh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85139,276,352 - 139,401,118 (+)NCBIGRCr8
mRatBN7.25133,991,167 - 134,115,893 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5133,990,520 - 134,122,105 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5136,757,225 - 136,843,663 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05138,513,679 - 138,600,119 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05138,534,308 - 138,620,740 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05139,379,256 - 139,466,805 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5139,385,429 - 139,466,081 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05143,162,751 - 143,249,837 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45141,039,645 - 141,127,334 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15141,006,241 - 141,132,777 (+)NCBI
Celera5132,585,181 - 132,671,540 (+)NCBICelera
Cytogenetic Map5q36NCBI
Scmh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955537824,828 - 937,324 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955537819,209 - 971,297 (-)NCBIChiLan1.0ChiLan1.0
SCMH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21185,571,699 - 185,788,728 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11184,713,709 - 184,930,344 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0140,323,101 - 40,540,236 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1141,639,127 - 41,809,094 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl141,639,127 - 41,776,261 (-)Ensemblpanpan1.1panPan2
SCMH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1151,917,503 - 2,056,325 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl151,917,509 - 2,058,904 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha152,138,061 - 2,315,655 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0151,969,172 - 2,146,826 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl151,969,227 - 2,146,822 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1151,874,915 - 2,052,478 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0151,934,876 - 2,112,665 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0151,950,439 - 2,128,033 (+)NCBIUU_Cfam_GSD_1.0
Scmh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505856,818,076 - 56,959,576 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647422,647,334 - 22,774,405 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647422,648,156 - 22,784,399 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCMH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6169,999,792 - 170,189,353 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16169,999,763 - 170,189,357 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26157,208,869 - 157,236,957 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SCMH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12091,724,068 - 91,890,131 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2091,751,977 - 91,889,164 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603324,991,230 - 25,217,051 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004871794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004871795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004871798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004871802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004871803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004871804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013068182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021249872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01100209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01100220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GEBF01002149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH166497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000014336   ⟹   ENSHGLP00000014193
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624892435,459 - 544,748 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000014337   ⟹   ENSHGLP00000014194
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624892436,151 - 550,941 (-)Ensembl
RefSeq Acc Id: XM_004871794   ⟹   XP_004871851
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624892435,145 - 621,188 (-)NCBI
RefSeq Acc Id: XM_004871795   ⟹   XP_004871852
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624892435,145 - 621,184 (-)NCBI
RefSeq Acc Id: XM_004871798   ⟹   XP_004871855
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624892435,145 - 621,187 (-)NCBI
RefSeq Acc Id: XM_004871802   ⟹   XP_004871859
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624892435,145 - 621,187 (-)NCBI
RefSeq Acc Id: XM_004871803   ⟹   XP_004871860
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624892435,145 - 621,192 (-)NCBI
RefSeq Acc Id: XM_004871804   ⟹   XP_004871861
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624892435,145 - 621,203 (-)NCBI
RefSeq Acc Id: XM_013068182   ⟹   XP_012923636
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624892435,145 - 550,794 (-)NCBI
RefSeq Acc Id: XM_021249866   ⟹   XP_021105525
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624892435,145 - 571,926 (-)NCBI
RefSeq Acc Id: XM_021249867   ⟹   XP_021105526
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624892435,145 - 621,188 (-)NCBI
RefSeq Acc Id: XM_021249868   ⟹   XP_021105527
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624892435,145 - 546,879 (-)NCBI
RefSeq Acc Id: XM_021249869   ⟹   XP_021105528
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624892435,145 - 621,188 (-)NCBI
RefSeq Acc Id: XM_021249871   ⟹   XP_021105530
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624892435,145 - 550,794 (-)NCBI
RefSeq Acc Id: XM_021249872   ⟹   XP_021105531
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624892435,145 - 533,752 (-)NCBI
RefSeq Acc Id: XP_004871861   ⟸   XM_004871804
- Peptide Label: isoform X9
- UniProtKB: A0A0P6JDK2 (UniProtKB/TrEMBL),   A0AAX6QEH4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004871860   ⟸   XM_004871803
- Peptide Label: isoform X8
- UniProtKB: A0A0P6JDK2 (UniProtKB/TrEMBL),   A0AAX6QB82 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004871851   ⟸   XM_004871794
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JDK2 (UniProtKB/TrEMBL),   A0AAX6S8Q0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105528   ⟸   XM_021249869
- Peptide Label: isoform X4
- UniProtKB: G5AQJ6 (UniProtKB/TrEMBL),   A0A0P6JDK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105526   ⟸   XM_021249867
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JDK2 (UniProtKB/TrEMBL),   A0AAX6S8B8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004871855   ⟸   XM_004871798
- Peptide Label: isoform X3
- UniProtKB: A0A0P6JDK2 (UniProtKB/TrEMBL),   A0AAX6QDP9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004871859   ⟸   XM_004871802
- Peptide Label: isoform X7
- UniProtKB: A0A0P6JDK2 (UniProtKB/TrEMBL),   A0AAX6QF12 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004871852   ⟸   XM_004871795
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JDK2 (UniProtKB/TrEMBL),   A0AAX6S8Q0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105525   ⟸   XM_021249866
- Peptide Label: isoform X1
- UniProtKB: A0A0P6JDK2 (UniProtKB/TrEMBL),   A0AAX6S8Q0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012923636   ⟸   XM_013068182
- Peptide Label: isoform X6
- UniProtKB: A0A0P6JDK2 (UniProtKB/TrEMBL),   A0AAX6QLU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105530   ⟸   XM_021249871
- Peptide Label: isoform X5
- UniProtKB: A0A0P6JDK2 (UniProtKB/TrEMBL),   A0AAX6SAU9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105527   ⟸   XM_021249868
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JDK2 (UniProtKB/TrEMBL),   A0AAX6S8B8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021105531   ⟸   XM_021249872
- Peptide Label: isoform X10
- UniProtKB: A0A0P6JDK2 (UniProtKB/TrEMBL),   A0AAX6SAG0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000014194   ⟸   ENSHGLT00000014337
Ensembl Acc Id: ENSHGLP00000014193   ⟸   ENSHGLT00000014336


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010141 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000014336 ENTREZGENE
  ENSHGLT00000014337 ENTREZGENE
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
  3.90.1150.190 UniProtKB/TrEMBL
InterPro Mbt UniProtKB/TrEMBL
  MBT_SCMH1_rpt1 UniProtKB/TrEMBL
  MBT_SCMH1_rpt2 UniProtKB/TrEMBL
  PcG_chromatin_remod_factors UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  SAM_Scm-like UniProtKB/TrEMBL
  SCML2_RBR UniProtKB/TrEMBL
  SLED UniProtKB/TrEMBL
  SLED_sf UniProtKB/TrEMBL
NCBI Gene Scmh1 ENTREZGENE
PANTHER POLYCOMB GROUP PROTEIN UniProtKB/TrEMBL
  POLYCOMB PROTEIN SCMH1 UniProtKB/TrEMBL
Pfam MBT UniProtKB/TrEMBL
  RBR UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
  SLED UniProtKB/TrEMBL
PROSITE MBT UniProtKB/TrEMBL
SMART MBT UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A0P6JDK2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QB82 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QDP9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QEH4 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QF12 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QLU7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S8B8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S8Q0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SAG0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SAU9 ENTREZGENE, UniProtKB/TrEMBL
  G5AQJ6 ENTREZGENE, UniProtKB/TrEMBL