Atp5f1b (ATP synthase F1 subunit beta) - Rat Genome Database

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Gene: Atp5f1b (ATP synthase F1 subunit beta) Heterocephalus glaber
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Symbol: Atp5f1b
Name: ATP synthase F1 subunit beta
RGD ID: 18929057
Description: ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); cellular response to peptide (ortholog); cold acclimation (ortholog); PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH acute kidney failure (ortholog); cardiomyopathy (ortholog); cataract 15 multiple types (ortholog); FOUND IN cell surface (ortholog); membrane raft (ortholog); mitochondrial inner membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP synthase subunit beta, mitochondrial; ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide; Atp5b
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480211,399,474 - 11,409,700 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480211,400,288 - 11,408,785 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp5f1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480211,399,474 - 11,409,700 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480211,400,288 - 11,408,785 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP5F1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381256,638,175 - 56,645,984 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1256,638,175 - 56,645,984 (-)EnsemblGRCh38hg38GRCh38
GRCh371257,031,959 - 57,039,768 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361255,318,226 - 55,326,119 (-)NCBINCBI36Build 36hg18NCBI36
Build 341255,318,227 - 55,326,119NCBI
Celera1256,683,671 - 56,691,564 (-)NCBICelera
Cytogenetic Map12q13.3NCBI
HuRef1254,071,237 - 54,079,130 (-)NCBIHuRef
CHM1_11256,999,492 - 57,007,379 (-)NCBICHM1_1
T2T-CHM13v2.01256,606,172 - 56,613,970 (-)NCBIT2T-CHM13v2.0
Atp5f1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910127,919,176 - 127,926,257 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10127,919,142 - 127,926,260 (+)EnsemblGRCm39 Ensembl
GRCm3810128,083,307 - 128,090,388 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10128,083,273 - 128,090,391 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710127,520,363 - 127,527,444 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610127,486,256 - 127,493,337 (+)NCBIMGSCv36mm8
Celera10130,478,043 - 130,485,124 (+)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1076.39NCBI
Atp5f1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr871,100,058 - 1,106,461 (+)NCBIGRCr8
mRatBN7.27515,454 - 521,858 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7515,460 - 567,273 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx73,274,116 - 3,280,516 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.075,150,130 - 5,156,530 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.075,451,361 - 5,457,743 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.072,504,708 - 2,511,748 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl72,504,695 - 2,511,749 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.072,484,095 - 2,490,338 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.471,376,552 - 1,383,228 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.171,377,178 - 1,383,228 (+)NCBI
Celera7394,648 - 401,125 (+)NCBICelera
Cytogenetic Map7q11NCBI
Atp5f1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554584,186,461 - 4,195,494 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554584,188,167 - 4,195,575 (-)NCBIChiLan1.0ChiLan1.0
ATP5F1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21037,680,429 - 37,689,113 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11237,677,947 - 37,685,879 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01232,264,570 - 32,272,419 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11232,519,749 - 32,527,753 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1232,519,749 - 32,527,753 (+)Ensemblpanpan1.1panPan2
ATP5F1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.110870,405 - 876,937 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl10870,392 - 909,161 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha10933,592 - 940,127 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.010879,724 - 886,261 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl10879,724 - 919,087 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.110856,580 - 863,114 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0101,099,743 - 1,106,277 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0101,223,513 - 1,230,049 (-)NCBIUU_Cfam_GSD_1.0
Atp5f1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494557,911,328 - 57,918,999 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936646951,009 - 959,516 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936646951,236 - 958,907 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5F1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl521,984,580 - 21,992,407 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1521,984,750 - 21,992,393 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2523,659,081 - 23,666,726 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5F1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11152,587,608 - 52,600,057 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1152,587,143 - 52,600,756 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037193,380,244 - 193,389,154 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000008436   ⟹   ENSHGLP00000008347
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462480211,399,474 - 11,409,700 (+)Ensembl
RefSeq Acc Id: XM_004861278   ⟹   XP_004861335
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480211,400,288 - 11,408,785 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004861335 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB06528 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008347
  ENSHGLP00100014948
RefSeq Acc Id: XP_004861335   ⟸   XM_004861278
- UniProtKB: G5BB67 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000008347   ⟸   ENSHGLT00000008436


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006040 Ensembl, ENTREZGENE
  ENSHGLG00100011070 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000008436 ENTREZGENE
  ENSHGLT00100015113 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.170 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/TrEMBL
  ATP-synt_VA_C UniProtKB/TrEMBL
  ATP_synth_F1_bsu UniProtKB/TrEMBL
  ATPase_a/bsu_AS UniProtKB/TrEMBL
  ATPase_alpha/beta_chains UniProtKB/TrEMBL
  ATPase_F1/V1/A1_a/bsu_N UniProtKB/TrEMBL
  ATPase_F1/V1/A1_a/bsu_N_sf UniProtKB/TrEMBL
  ATPase_F1/V1/A1_a/bsu_nucl-bd UniProtKB/TrEMBL
  ATPase_F1/V1_b/a_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report hgl:101701683 UniProtKB/TrEMBL
NCBI Gene Atp5f1b ENTREZGENE
PANTHER ATP SYNTHASE UniProtKB/TrEMBL
  ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam ATP-synt_ab UniProtKB/TrEMBL
  ATP-synt_ab_N UniProtKB/TrEMBL
  ATP-synt_VA_C UniProtKB/TrEMBL
PIRSF ATPase_subunit_beta UniProtKB/TrEMBL
PROSITE ATPASE_ALPHA_BETA UniProtKB/TrEMBL
SMART AAA UniProtKB/TrEMBL
Superfamily-SCOP C-terminal domain of alpha and beta subunits of F1 ATP synthase UniProtKB/TrEMBL
  SSF50615 UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt G5BB67 ENTREZGENE, UniProtKB/TrEMBL