Atp6v1f (ATPase H+ transporting V1 subunit F) - Rat Genome Database

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Gene: Atp6v1f (ATPase H+ transporting V1 subunit F) Heterocephalus glaber
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Symbol: Atp6v1f
Name: ATPase H+ transporting V1 subunit F
RGD ID: 18927490
Description: ENCODES a protein that exhibits proton-transporting ATPase activity, rotational mechanism (inferred); INVOLVED IN synaptic vesicle lumen acidification (ortholog); ASSOCIATED WITH autosomal dominant limb-girdle muscular dystrophy type 2 (ortholog); COVID-19 (ortholog); myofibrillar myopathy 5 (ortholog); FOUND IN extrinsic component of synaptic vesicle membrane (ortholog); proton-transporting V-type ATPase complex (ortholog); vacuolar proton-transporting V-type ATPase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: V-type proton ATPase subunit F
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247837,328,113 - 7,331,666 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247837,328,113 - 7,331,648 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp6v1f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247837,328,113 - 7,331,666 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247837,328,113 - 7,331,648 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ATP6V1F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387128,862,856 - 128,865,847 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7128,862,856 - 128,865,847 (+)EnsemblGRCh38hg38GRCh38
GRCh377128,502,910 - 128,505,901 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367128,290,134 - 128,293,138 (+)NCBINCBI36Build 36hg18NCBI36
Build 347128,096,848 - 128,099,853NCBI
Celera7123,299,412 - 123,302,416 (+)NCBICelera
Cytogenetic Map7q32.1NCBI
HuRef7122,864,496 - 122,867,540 (+)NCBIHuRef
CHM1_17128,436,151 - 128,439,197 (+)NCBICHM1_1
T2T-CHM13v2.07130,175,783 - 130,178,774 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27127,886,602 - 127,889,648 (+)NCBI
Atp6v1f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,467,782 - 29,470,508 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl629,467,717 - 29,470,511 (+)EnsemblGRCm39 Ensembl
GRCm38629,467,783 - 29,470,509 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,467,718 - 29,470,512 (+)EnsemblGRCm38mm10GRCm38
MGSCv37629,417,783 - 29,420,509 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36629,417,793 - 29,420,519 (+)NCBIMGSCv36mm8
Celera629,475,661 - 29,478,387 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.36NCBI
Atp6v1f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8459,033,020 - 59,035,980 (+)NCBIGRCr8
mRatBN7.2458,067,666 - 58,070,628 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx463,050,712 - 63,053,652 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0458,966,874 - 58,969,814 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0457,368,753 - 57,371,693 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0456,744,563 - 56,747,657 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl456,744,561 - 56,747,656 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0456,511,724 - 56,514,818 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,347,184 - 56,350,085 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1456,605,455 - 56,609,468 (+)NCBI
Celera453,175,569 - 53,178,529 (+)NCBICelera
Cytogenetic Map4q22NCBI
Atp6v1f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554799,664,574 - 9,667,667 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554799,664,574 - 9,667,667 (+)NCBIChiLan1.0ChiLan1.0
ATP6V1F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26165,667,153 - 165,670,444 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1717,677,399 - 17,680,690 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07120,814,560 - 120,817,612 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17133,339,279 - 133,342,423 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7133,339,284 - 133,342,423 (+)Ensemblpanpan1.1panPan2
ATP6V1F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,786,841 - 7,789,584 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,786,844 - 7,789,548 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha147,473,699 - 7,476,441 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,552,723 - 7,555,466 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,552,726 - 7,555,430 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,757,752 - 7,760,490 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,499,763 - 7,502,507 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0147,645,178 - 7,647,919 (-)NCBIUU_Cfam_GSD_1.0
Atp6v1f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511854,663,836 - 54,666,585 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647915,787,629 - 15,790,265 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647915,787,609 - 15,790,354 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP6V1F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1819,753,506 - 19,756,648 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,753,761 - 19,756,706 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21820,885,979 - 20,888,924 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP6V1F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12197,464,741 - 97,467,749 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2197,464,146 - 97,468,370 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660425,934,352 - 5,937,781 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000005948   ⟹   ENSHGLP00000005874
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247837,328,113 - 7,331,666 (-)Ensembl
Ensembl Acc Id: ENSHGLT00000005949   ⟹   ENSHGLP00000005875
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247837,328,341 - 7,329,860 (-)Ensembl
RefSeq Acc Id: XM_004856373   ⟹   XP_004856430
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247837,328,113 - 7,331,648 (-)NCBI
RefSeq Acc Id: XM_021237563   ⟹   XP_021093222
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247837,328,113 - 7,331,624 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004856430 (Get FASTA)   NCBI Sequence Viewer  
  XP_021093222 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000005874
GenBank Protein JAO01520 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004856430   ⟸   XM_004856373
- Peptide Label: isoform X2
- UniProtKB: A0A0P6K6P8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021093222   ⟸   XM_021237563
- Peptide Label: isoform X1
- UniProtKB: A0AAX6R6R3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000005874   ⟸   ENSHGLT00000005948
Ensembl Acc Id: ENSHGLP00000005875   ⟸   ENSHGLT00000005949


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000004290 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000005948 ENTREZGENE
Gene3D-CATH 3.40.50.10580 UniProtKB/TrEMBL
InterPro ATPase_V1-cplx_f_g_su UniProtKB/TrEMBL
  ATPase_V1-cplx_fsu_euk UniProtKB/TrEMBL
  ATPase_V1_fsu_sf UniProtKB/TrEMBL
KEGG Report hgl:101714218 UniProtKB/TrEMBL
NCBI Gene Atp6v1f ENTREZGENE
PANTHER V-TYPE PROTON ATPASE SUBUNIT F UniProtKB/TrEMBL
  VACUOLAR ATP SYNTHASE SUBUNIT F UniProtKB/TrEMBL
Pfam ATP-synt_F UniProtKB/TrEMBL
PIRSF ATPase_V1_F_euk UniProtKB/TrEMBL
Superfamily-SCOP SSF159468 UniProtKB/TrEMBL
UniProt A0A0P6K6P8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R6R3 ENTREZGENE, UniProtKB/TrEMBL