Cldn14 (claudin 14) - Rat Genome Database

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Gene: Cldn14 (claudin 14) Heterocephalus glaber
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Symbol: Cldn14
Name: claudin 14
RGD ID: 18926257
Description: ENCODES a protein that exhibits structural molecule activity (inferred); ASSOCIATED WITH Acidoses (ortholog); Alport syndrome (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); FOUND IN bicellular tight junction (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Claudin-14
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474527,058,911 - 27,074,282 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474527,058,441 - 27,074,288 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Cldn14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474527,058,911 - 27,074,282 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474527,058,441 - 27,074,288 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CLDN14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382136,460,621 - 36,576,569 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2136,460,621 - 36,576,569 (-)EnsemblGRCh38hg38GRCh38
GRCh372137,832,919 - 37,948,867 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362136,754,789 - 36,774,258 (-)NCBINCBI36Build 36hg18NCBI36
Build 342136,754,788 - 36,774,258NCBI
Celera2123,031,290 - 23,147,246 (-)NCBICelera
Cytogenetic Map21q22.13NCBI
HuRef2123,308,758 - 23,424,553 (-)NCBIHuRef
CHM1_12137,394,668 - 37,510,188 (-)NCBICHM1_1
T2T-CHM13v2.02134,843,222 - 34,958,721 (-)NCBIT2T-CHM13v2.0
Cldn14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391693,715,919 - 93,809,733 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1693,715,919 - 93,809,696 (-)EnsemblGRCm39 Ensembl
GRCm381693,919,031 - 94,008,837 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1693,919,031 - 94,008,837 (-)EnsemblGRCm38mm10GRCm38
MGSCv371693,919,276 - 94,009,082 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361693,807,573 - 93,897,377 (-)NCBIMGSCv36mm8
Celera1695,007,775 - 95,094,719 (-)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1654.99NCBI
Cldn14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81146,701,940 - 46,799,049 (-)NCBIGRCr8
mRatBN7.21133,232,281 - 33,329,440 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1133,232,220 - 33,329,171 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1141,886,839 - 41,896,662 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01134,558,195 - 34,568,023 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01133,708,164 - 33,718,037 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01134,132,581 - 34,142,813 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1134,132,581 - 34,142,753 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01137,721,801 - 37,732,031 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41134,142,138 - 34,151,928 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11134,198,380 - 34,208,171 (-)NCBI
Celera1135,202,958 - 35,212,543 (+)NCBICelera
Cytogenetic Map11q11NCBI
Cldn14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540735,641,560 - 35,728,105 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540735,641,560 - 35,728,105 (-)NCBIChiLan1.0ChiLan1.0
CLDN14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22232,581,439 - 32,601,102 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12127,441,315 - 27,460,976 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02122,830,770 - 22,946,594 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12136,186,950 - 36,206,412 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2136,187,306 - 36,188,025 (-)Ensemblpanpan1.1panPan2
CLDN14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13131,677,410 - 31,725,794 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3131,677,733 - 31,678,446 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3130,738,456 - 30,787,847 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03130,979,723 - 31,029,111 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3130,980,486 - 30,981,199 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13130,847,849 - 30,897,442 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03130,860,674 - 30,910,421 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03131,350,742 - 31,400,174 (-)NCBIUU_Cfam_GSD_1.0
Cldn14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497131,240,241 - 31,336,678 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365006,226,618 - 6,227,337 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365006,207,856 - 6,227,582 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLDN14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13200,128,477 - 200,145,525 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113200,121,796 - 200,201,712 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213210,156,559 - 210,157,513 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLDN14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1280,457,907 - 80,535,855 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl280,458,270 - 80,458,989 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660548,299,812 - 8,377,996 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000013142   ⟹   ENSHGLP00000013005
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474527,058,911 - 27,074,282 (+)Ensembl
RefSeq Acc Id: XM_021256286   ⟹   XP_021111945
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474527,058,441 - 27,074,288 (+)NCBI
RefSeq Acc Id: XR_001183306
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474527,058,441 - 27,069,096 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021111945 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB03594 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013005
GenBank Protein JAN96028 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021111945   ⟸   XM_021256286
- UniProtKB: G5B2U1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000013005   ⟸   ENSHGLT00000013142


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009298 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000013142 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.20.140.150 UniProtKB/TrEMBL
InterPro Claudin UniProtKB/TrEMBL
  Claudin_CS UniProtKB/TrEMBL
  PMP22/EMP/MP20/Claudin UniProtKB/TrEMBL
KEGG Report hgl:101724744 UniProtKB/TrEMBL
NCBI Gene Cldn14 ENTREZGENE
PANTHER PTHR12002 UniProtKB/TrEMBL
Pfam PMP22_Claudin UniProtKB/TrEMBL
PRINTS CLAUDIN UniProtKB/TrEMBL
  CLAUDIN14 UniProtKB/TrEMBL
PROSITE CLAUDIN UniProtKB/TrEMBL
UniProt G5B2U1 ENTREZGENE, UniProtKB/TrEMBL