Kera (keratocan) - Rat Genome Database

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Gene: Kera (keratocan) Heterocephalus glaber
Analyze
Symbol: Kera
Name: keratocan
RGD ID: 18925891
Description: INVOLVED IN cornea development in camera-type eye (inferred); ASSOCIATED WITH arcus senilis (ortholog); cornea plana (ortholog); Cornea Plana 2 (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475015,600,703 - 15,608,320 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475015,600,857 - 15,608,259 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kera
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475015,600,703 - 15,608,320 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475015,600,857 - 15,608,259 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
KERA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381291,050,491 - 91,058,024 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1291,050,491 - 91,058,024 (-)EnsemblGRCh38hg38GRCh38
GRCh371291,444,268 - 91,451,801 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361289,968,399 - 89,976,262 (-)NCBINCBI36Build 36hg18NCBI36
Build 341289,946,738 - 89,954,599NCBI
Celera1291,115,429 - 91,123,289 (-)NCBICelera
Cytogenetic Map12q21.33NCBI
HuRef1288,512,052 - 88,519,912 (-)NCBIHuRef
CHM1_11291,409,247 - 91,417,110 (-)NCBICHM1_1
T2T-CHM13v2.01291,028,004 - 91,035,533 (-)NCBIT2T-CHM13v2.0
Kera
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391097,442,873 - 97,449,555 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1097,442,741 - 97,449,554 (+)EnsemblGRCm39 Ensembl
GRCm381097,606,962 - 97,613,688 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1097,606,879 - 97,613,692 (+)EnsemblGRCm38mm10GRCm38
MGSCv371097,069,839 - 97,076,322 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361097,036,893 - 97,043,376 (+)NCBIMGSCv36mm8
Celera1099,578,265 - 99,584,748 (+)NCBICelera
Cytogenetic Map10C3NCBI
cM Map1050.34NCBI
Kera
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8734,284,100 - 34,291,555 (+)NCBIGRCr8
mRatBN7.2732,397,382 - 32,404,837 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl732,397,382 - 32,404,837 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx734,364,558 - 34,372,019 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0736,552,782 - 36,560,241 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0736,287,110 - 36,294,571 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0738,858,062 - 38,865,515 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl738,858,062 - 38,865,515 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0738,899,411 - 38,906,864 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4735,121,875 - 35,129,326 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1735,142,278 - 35,148,859 (+)NCBI
Celera729,434,981 - 29,442,436 (+)NCBICelera
Cytogenetic Map7q13NCBI
Kera
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540528,256,001 - 28,263,600 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540528,256,054 - 28,263,559 (-)NCBIChiLan1.0ChiLan1.0
KERA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21099,083,778 - 99,091,277 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11299,080,172 - 99,087,671 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01288,583,919 - 88,591,418 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11291,899,373 - 91,907,201 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1291,899,381 - 91,911,615 (-)Ensemblpanpan1.1panPan2
KERA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11531,750,768 - 31,758,588 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1531,670,924 - 31,758,871 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1532,205,471 - 32,213,266 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01532,406,626 - 32,414,412 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1532,406,917 - 32,414,688 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11531,699,512 - 31,707,323 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01531,763,195 - 31,770,989 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01532,056,262 - 32,064,052 (-)NCBIUU_Cfam_GSD_1.0
Kera
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494528,424,223 - 28,433,345 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365077,801,577 - 7,811,196 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365077,802,091 - 7,811,123 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KERA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl591,796,324 - 91,802,468 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1591,794,317 - 91,802,362 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2596,273,468 - 96,281,118 (+)NCBISscrofa10.2Sscrofa10.2susScr3
KERA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11186,467,315 - 86,475,217 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1186,468,181 - 86,473,097 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037158,710,719 - 158,718,002 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000014765   ⟹   ENSHGLP00000014620
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475015,600,703 - 15,608,320 (+)Ensembl
RefSeq Acc Id: XM_004844980   ⟹   XP_004845037
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475015,600,857 - 15,608,259 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004845037 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB12255 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014620
GenBank Protein JAN96015 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004845037   ⟸   XM_004844980
- UniProtKB: G5BSJ4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000014620   ⟸   ENSHGLT00000014765


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010458 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000014765 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
  SLRP UniProtKB/TrEMBL
KEGG Report hgl:101725130 UniProtKB/TrEMBL
NCBI Gene Kera ENTREZGENE
PANTHER AGAP008170-PA UniProtKB/TrEMBL
  KERATOCAN UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_BAC UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt G5BSJ4 ENTREZGENE, UniProtKB/TrEMBL