Oip5 (Opa interacting protein 5) - Rat Genome Database

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Gene: Oip5 (Opa interacting protein 5) Heterocephalus glaber
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Symbol: Oip5
Name: Opa interacting protein 5
RGD ID: 18925710
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cell division (inferred); CENP-A containing chromatin assembly (inferred); chromosome segregation (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); mosaic variegated aneuploidy syndrome 1 (ortholog); FOUND IN Cajal body (ortholog); chromocenter (ortholog); intracellular membrane-bounded organelle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Protein Mis18-beta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248048,488,497 - 8,510,350 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248048,492,634 - 8,510,465 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Oip5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248048,488,497 - 8,510,350 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248048,492,634 - 8,510,465 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
OIP5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381541,309,273 - 41,332,591 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1541,309,273 - 41,332,591 (-)EnsemblGRCh38hg38GRCh38
GRCh371541,601,471 - 41,624,789 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361539,388,758 - 39,412,111 (-)NCBINCBI36Build 36hg18NCBI36
Build 341539,388,759 - 39,412,111NCBI
Celera1518,369,443 - 18,392,796 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1518,450,035 - 18,473,264 (-)NCBIHuRef
CHM1_11541,719,576 - 41,742,481 (-)NCBICHM1_1
T2T-CHM13v2.01539,115,437 - 39,138,755 (-)NCBIT2T-CHM13v2.0
Oip5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392119,440,013 - 119,448,986 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2119,439,993 - 119,448,950 (-)EnsemblGRCm39 Ensembl
GRCm382119,609,532 - 119,618,505 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,609,512 - 119,618,469 (-)EnsemblGRCm38mm10GRCm38
MGSCv372119,435,268 - 119,444,241 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362119,435,268 - 119,444,241 (-)NCBIMGSCv36mm8
Celera2120,763,329 - 120,772,134 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.97NCBI
Oip5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83127,047,559 - 127,057,043 (-)NCBIGRCr8
mRatBN7.23106,593,746 - 106,603,281 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,593,760 - 106,603,250 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3110,271,202 - 110,280,663 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,866,747 - 118,876,208 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,527,136 - 116,536,597 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03111,413,662 - 111,422,320 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3111,416,536 - 111,422,203 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03117,962,273 - 117,970,788 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43106,124,769 - 106,134,136 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3105,506,665 - 105,515,085 (-)NCBICelera
Cytogenetic Map3q35NCBI
Oip5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554168,168,319 - 8,179,408 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554168,168,143 - 8,178,459 (-)NCBIChiLan1.0ChiLan1.0
OIP5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21630,550,470 - 30,573,940 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11534,701,061 - 34,725,232 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01520,250,339 - 20,273,856 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11538,494,534 - 38,517,304 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1538,494,534 - 38,517,300 (-)Ensemblpanpan1.1panPan2
OIP5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1308,377,407 - 8,396,222 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl308,381,395 - 8,396,096 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha308,437,465 - 8,455,625 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0308,512,598 - 8,530,805 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl308,515,075 - 8,530,717 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1308,433,103 - 8,452,262 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0308,541,602 - 8,559,792 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0308,672,914 - 8,691,126 (-)NCBIUU_Cfam_GSD_1.0
Oip5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,844,351 - 86,857,626 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364714,692,099 - 4,705,984 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364714,692,482 - 4,705,643 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OIP5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,036,480 - 130,047,041 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11130,036,478 - 130,054,058 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,057,619 - 145,065,691 (+)NCBISscrofa10.2Sscrofa10.2susScr3
OIP5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12641,667,929 - 41,682,056 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604899,290,564 - 99,305,942 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000019733   ⟹   ENSHGLP00000019540
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248048,488,497 - 8,510,350 (-)Ensembl
RefSeq Acc Id: XM_004861597   ⟹   XP_004861654
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248048,502,124 - 8,510,465 (-)NCBI
RefSeq Acc Id: XM_021241861   ⟹   XP_021097520
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248048,492,634 - 8,510,465 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004861654 (Get FASTA)   NCBI Sequence Viewer  
  XP_021097520 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB10325 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019540
  ENSHGLP00100019531
RefSeq Acc Id: XP_021097520   ⟸   XM_021241861
- UniProtKB: G5BM11 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861654   ⟸   XM_004861597
- UniProtKB: G5BM11 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000019540   ⟸   ENSHGLT00000019733


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013989 Ensembl, ENTREZGENE
  ENSHGLG00100014398 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000019733 ENTREZGENE
  ENSHGLT00100019734 UniProtKB/TrEMBL
InterPro Mis18 UniProtKB/TrEMBL
  Yippee/Mis18/Cereblon UniProtKB/TrEMBL
KEGG Report hgl:101724615 UniProtKB/TrEMBL
NCBI Gene Oip5 ENTREZGENE
PANTHER NEUROGENIC PROTEIN MASTERMIND UniProtKB/TrEMBL
  PROTEIN MIS18-BETA UniProtKB/TrEMBL
Pfam Yippee-Mis18 UniProtKB/TrEMBL
PROSITE MIS18 UniProtKB/TrEMBL
UniProt G5BM11 ENTREZGENE, UniProtKB/TrEMBL